PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6677s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 411aa    MW: 45489.5 Da    PI: 5.9155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6677s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.2e-09252300355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Cagra.6677s0005.1.p 252 NSHSLAERVRREKISERMKFLQDLVPGC----DKVTGKAVMLDEIINYVQSLQ 300
                          58*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.22E-11247304No hitNo description
SuperFamilySSF474591.96E-16247317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.497249299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15250313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-6252300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-9255305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDMSDKDEFA AKKMDLDWRI SVSNPIVSYP PENPMSGPSQ MMDSFRQNLW HDGGGFNVHT  60
DRGTSSRGNV DRPVEMGWNM AQFPADSGFI ERAAKFSFFG CGSFGEMMMN QQSLGGPQST  120
GLFVQDTQNQ IGVATGSNQV DGPLKDATKV VKENGSSNVS EDSQSSGGNG HDDAKCMEIS  180
SKRFNAKKRK RTGKDSEHRG QQSGEEEEED KNEKDEQSPN SNANKTNSGK QASDTLKDGY  240
IHMRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCD KVTGKAVMLD EIINYVQSLQ  300
CQIEFLSMKL SAVNPVLDFN LESLLAKDAL QVPAPILPQD MSMLYPPLSH HSQKGFMQPN  360
ISSMSILNGG LIRQERHGYE SDQHNVVHMN HETDTAPNHE DTTANRKVEP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191KKRKRT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6677s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304830.0AJ630483.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g26260.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307586.20.0transcription factor bHLH76
SwissprotQ9C6700.0BH076_ARATH; Transcription factor bHLH76
TrEMBLR0IDB90.0R0IDB9_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.6677s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM166891012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.20.0cryptochrome-interacting basic-helix-loop-helix 5
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]