PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6777s0013.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 393aa    MW: 44898.6 Da    PI: 5.7952
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6777s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-1812101198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv+   ++++s+ +v+p ++ ++   +   +k+++l+ + g sW+v    + +++++ l++GW++Fv++n L++gDf++F ++g++ f
  Cagra.6777s0013.1.p  12 FFKVF--VSHFSSDSMVIPISYYDQLPRV--LPKKVILQGPGGGSWNVAT--KIRGEEVHLAQGWSKFVEDNTLNDGDFLTFIYNGDRIF 95 
                          88999..89999999********877655..899****************..99999999************************998888 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                             v+++r
  Cagra.6777s0013.1.p  96 --EVSIYR 101
                          ..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-229105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-2310105IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-1510101No hitNo description
PROSITE profilePS5086314.7910103IPR003340B3 DNA binding domain
PfamPF023623.1E-1612101IPR003340B3 DNA binding domain
SMARTSM010191.3E-1912103IPR003340B3 DNA binding domain
SMARTSM010191.1292384IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MATTDFQFPP RFFKVFVSHF SSDSMVIPIS YYDQLPRVLP KKVILQGPGG GSWNVATKIR  60
GEEVHLAQGW SKFVEDNTLN DGDFLTFIYN GDRIFEVSIY RSDGCKETCE VTEVEDEKID  120
SVCSLSSDDT DTCPKPEMNN TIPKGRDKGK SKVQVVEDSD EHENSVYSES SDETKTDSDT  180
DSEFKIAKKT TPKRMNKGKK KKEAVEESSD EDGDGDSDSD YVEAFGQLDV EEKSDSEDSS  240
YAPENEDTAA TTCVKPKVPN LKRKEAAKKR KKVEPKIKNP ETYLDDPKNI HFETNVKNRL  300
YELLVHAQLV KDYCLTFGDH VDYIDRFGKL RAKTAKWKDQ RVCIKRWMRI CKRNELKKED  360
RILCELLRRG SFVYAIKLHV IRGENLVVRI CM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A5e-181110510104At1g16640
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267271KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6777s0013.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023635063.10.0B3 domain-containing protein At4g34400 isoform X1
SwissprotQ9SZ051e-172Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLR0F8940.0R0F894_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.6777s0013.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-152B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]