PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6845s0027.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 184aa    MW: 21313.4 Da    PI: 6.3051
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6845s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.73.4e-1574131562
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                          +++rr+ +NRe+ArrsR RK+  ++eL   v+ L +eN++L ++l++ ++  + + +e
  Cagra.6845s0027.1.p  74 RKQRRMVSNRESARRSRMRKQRHLDELMSQVAWLRSENHQLLDKLNQVSDSNDHVVQE 131
                          689********************************************99988766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-1570134IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.00172135IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.0E-1273127No hitNo description
PfamPF001705.2E-1374130IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.81E-1374124No hitNo description
CDDcd147027.82E-1975122No hitNo description
PROSITE patternPS0003607792IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MQPNYDSLSL NNMQQQDYFH LNNYYNNLTP STNNNLNLLQ YPQIHQELNL QSPASNNSTT  60
SDDATEGIFV INERKQRRMV SNRESARRSR MRKQRHLDEL MSQVAWLRSE NHQLLDKLNQ  120
VSDSNDHVVQ ENLNLKEENL ELRQVITSMK KLGGGIHEKY PSSSSMDEDF SSITDDPRSH  180
HPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18693RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00512DAPTransfer from AT5G15830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6845s0027.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1178280.0AK117828.1 Arabidopsis thaliana At5g15830 mRNA for putative bZIP transcription factor AtbZip3, complete cds, clone: RAFL18-02-O03.
GenBankAL3911440.0AL391144.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F14F8 (ESSA project).
GenBankBT0036830.0BT003683.1 Arabidopsis thaliana At5g15830 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288751.11e-131basic leucine zipper 43
SwissprotQ9FMC25e-33BZP43_ARATH; Basic leucine zipper 43
TrEMBLR0GXL91e-130R0GXL9_9BRAS; Uncharacterized protein
STRINGCagra.6845s0027.1.p1e-131(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106321532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15830.17e-82basic leucine-zipper 3
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]