PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.6952s0017.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bZIP

Protein Properties

Length: 391aa MW: 43876.7 Da PI: 6.5193

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.6952s0017.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.8	1.5e-10	200	258	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l l+ l+ e+ Cagra.6952s0017.1.p 200 KRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVEN 258 9********************************************99998887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.2E-15	196	260	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.565	198	261	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.6E-9	200	252	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.04E-10	200	251	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.5E-11	200	254	No hit	No description
CDD	cd14703	3.46E-22	201	250	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MDKEKSPAPC GGLPPPSPSG RCSAFSDSGP SGHGSDANRM SHDISRMLDK PPKKIGHRRA 60 HSEILTLPDD LSFDSDLGVV GNAVDGASFS DETEEDLLSM YLDMDKFNSS ATSSAQVGEP 120 SGTAWKNESM MQTGSTSIPH ITINSFAERP RIRHQHSQSM DGSMNINEML MSGNEDDSAI 180 DTKKSMSATK LAELALIDPK RAKRIWANRQ SAARSKERKT RYIFELERKV QTLQTEATTL 240 SAQLTLLQRD TNGLTVENNE LKLRLQTMEQ QVHLQDELNE ALKEEIQHLK VLTGQVAPSA 300 LNYGSFGSNQ QQFYSNNQSM QTILAAQQFQ QLQIHSQKQQ QQQQQQQQQQ QQQQYQFQQQ 360 QMQQLMQQRI QQQEQQNGVR LKPSQSQKES *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MDKEKSPAPC GGLPPPSPSG RCSAFSDSGP SGHGSDANRM SHDISRMLDK PPKKIGHRRA  60
HSEILTLPDD LSFDSDLGVV GNAVDGASFS DETEEDLLSM YLDMDKFNSS ATSSAQVGEP  120
SGTAWKNESM MQTGSTSIPH ITINSFAERP RIRHQHSQSM DGSMNINEML MSGNEDDSAI  180
DTKKSMSATK LAELALIDPK RAKRIWANRQ SAARSKERKT RYIFELERKV QTLQTEATTL  240
SAQLTLLQRD TNGLTVENNE LKLRLQTMEQ QVHLQDELNE ALKEEIQHLK VLTGQVAPSA  300
LNYGSFGSNQ QQFYSNNQSM QTILAAQQFQ QLQIHSQKQQ QQQQQQQQQQ QQQQYQFQQQ  360
QMQQLMQQRI QQQEQQNGVR LKPSQSQKES *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.6952s0017.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317087	0.0	AK317087.1 Arabidopsis thaliana AT2G31370 mRNA, complete cds, clone: RAFL21-87-G20.
GenBank	AY057534	0.0	AY057534.1 Arabidopsis thaliana At2g31370/T28P16.14 mRNA, complete cds.
GenBank	AY113058	0.0	AY113058.1 Arabidopsis thaliana At2g31370/T28P16.14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023640072.1	0.0	probable transcription factor PosF21 isoform X2
Swissprot	Q04088	0.0	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	R0HPN4	0.0	R0HPN4_9BRAS; Uncharacterized protein
STRING	Cagra.6952s0017.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31370.5	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cagra.6952s0017.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]