PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6952s0018.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family DBB
Protein Properties Length: 243aa    MW: 26963.2 Da    PI: 4.7332
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6952s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.5e-08443538
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                          C+ +e+ +++l C  ++  lC++C +e H        H+
  Cagra.6952s0018.1.p  4 QCDVCEKAPATLICCADEAALCANCDVEVHAAnklaskHQ 43
                         7*****************************6556666665 PP
2zf-B_box27.28.3e-095586435
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                         + C+ + ek + +fC +++ llC+dC +++H 
  Cagra.6952s0018.1.p 55 PPCDICLEKAAFIFCVEDRALLCRDCDEATHA 86
                         68*****************************4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.428147IPR000315B-box-type zinc finger
CDDcd000215.29E-7347No hitNo description
SMARTSM003366.5E-10447IPR000315B-box-type zinc finger
PfamPF006435.4E-6444IPR000315B-box-type zinc finger
SMARTSM003365.9E-145299IPR000315B-box-type zinc finger
PROSITE profilePS501199.3435299IPR000315B-box-type zinc finger
CDDcd000211.05E-65590No hitNo description
PfamPF006432.0E-65595IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MKIQCDVCEK APATLICCAD EAALCANCDV EVHAANKLAS KHQRLFLDSL STKFPPCDIC  60
LEKAAFIFCV EDRALLCRDC DEATHAPNTR SANHQRFLAT GIRVALSSTS CSQEVEKNHF  120
DPANQQNAKQ VLSKPQPPQS PAPSPLWASD EFFRYSDDLD CSNKKEQLDL GELDWLAEMG  180
FLGDQPDQEA LPAAEVPELS FSHLAHAHSY NRSMKSNVSN KKPRLEIRYD DDEEHFLVPD  240
LG*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6952s0018.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3236660.0AF323666.1 Arabidopsis thaliana B-box zinc finger protein STH mRNA, complete cds.
GenBankAF3250770.0AF325077.1 Arabidopsis thaliana putative CONSTANS-like B-box zinc finger protein (At2g31380) mRNA, complete cds.
GenBankAF3703110.0AF370311.1 Arabidopsis thaliana putative CONSTANS B-box zinc finger protein (At2g31380) mRNA, complete cds.
GenBankAY0630970.0AY063097.1 Arabidopsis thaliana putative CONSTANS B-box zinc finger protein (At2g31380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639418.11e-178B-box zinc finger protein 25 isoform X2
SwissprotQ9SID11e-155BBX25_ARATH; B-box zinc finger protein 25
TrEMBLR0HUW21e-165R0HUW2_9BRAS; Uncharacterized protein
STRINGCagra.6952s0018.1.p1e-178(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27112767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.11e-153salt tolerance homologue
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]