PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.7053s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 244aa    MW: 27179.5 Da    PI: 8.1198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.7053s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-1255101354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+h  +E+rRRdriNs +  Lr+l+P++      Kl+Ka+ L  ++e +k+L
  Cagra.7053s0004.1.p  55 RSHRLAEKRRRDRINSHLTALRKLVPNS-----DKLDKAALLATVIEQVKEL 101
                          68*************************8.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-1451107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.23152101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-1055101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-1455105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.01E-1255104No hitNo description
SMARTSM003534.7E-1258107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00235137211No hitNo description
Gene3DG3DSA:3.30.70.2607.8E-4143207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MENSYDSTTP YMVSWSLQSD SDWNRFNLGF SSSSSGNFPA DDCVGGIEKA ESLSRSHRLA  60
EKRRRDRINS HLTALRKLVP NSDKLDKAAL LATVIEQVKE LKQQAAESPI FQDLPTETDE  120
VTVQPETISD FESNTNTLIF RASFCCQDQP EAISEIIKVI TKLQLETIQA EIISVGGRMR  180
INFILRDNNC NKTTNVASSA KALKQSLCAA LNRITSSSSS STSSVCRIRS KRQRWFLSSH  240
YSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.7053s0004.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545950.0AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294672.21e-178transcription factor bHLH51
SwissprotQ9XEF01e-157BH051_ARATH; Transcription factor bHLH51
TrEMBLR0HQK61e-176R0HQK6_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.7053s0004.1.p1e-179(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-155bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]