PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.7055s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 532aa    MW: 58960.4 Da    PI: 5.9241
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.7055s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.44e-1361635313374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                           +L+ecA+av++ d  l+++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal++++ +     e l+++++++e++P++k
  Cagra.7055s0004.1.p 163 GVLYECAKAVENCDVDLTDWLVSQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDPT---GPELLTYMHILYEACPYFK 249
                          689****************************************************************9...9****************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                          f++  aN aI eav++e+ vHiiDf+isqG+QW++L++aL +Rp+gpp++RiTg+++p+s+  ++  le +g+rL k+Ae +gvpfef+ 
  Cagra.7055s0004.1.p 250 FGYESANGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPKVRITGIDDPRSSfaRQGGLELVGQRLGKLAEMCGVPFEFHG 339
                          **********************************************************999999************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           +a  ++++e+e+L v++gEalaVn+ l lh+++de v++e++rd++L+lvk+lsP+vv++veqea++n+++Fl rf+e++++y a+f+s
  Cagra.7055s0004.1.p 340 -AALCCTEVEIEKLGVRNGEALAVNFPLVLHHMPDEGVTVENHRDRLLRLVKHLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFES 428
                          .899************************************************************************************** PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                          +++kl+r+++eri+vE+++l+re+vn++aceg er+erhe l+kWr+r+++aGFkp+pls+++++++k ll+ ++++ y++ee++g+l+l
  Cagra.7055s0004.1.p 429 IDVKLARNHKERINVEQHCLAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEK-YTLEESDGALYL 517
                          ***************************************************************************65.************ PP

                 GRAS 361 gWkdrpLvsvSaWr 374
                          gWk++pL++ +aWr
  Cagra.7055s0004.1.p 518 GWKNQPLITSCAWR 531
                          *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.846135512IPR005202Transcription factor GRAS
PfamPF035141.4E-133163531IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MEATQKHMIQ DGSSMFYHPP SSVKQMDLSA QTFDSYCTLE SSSGTKSHPC LNMNNNNNNN  60
SSSTTSFSSN ESPLSQANNN NNSSSRFNHS PDDNNNSPLS GSSATNNNET ELSLMLKDLE  120
TAMMEPDLDS SFNHQGGFGQ QHRVVTSAMY RSMEMISRGD LKGVLYECAK AVENCDVDLT  180
DWLVSQLQQM VSVSGEPVQR LGAYMLEGLV ARLASSGSSI YKALRCKDPT GPELLTYMHI  240
LYEACPYFKF GYESANGAIA EAVKNESFVH IIDFQISQGG QWVSLIRALG ARPGGPPKVR  300
ITGIDDPRSS FARQGGLELV GQRLGKLAEM CGVPFEFHGA ALCCTEVEIE KLGVRNGEAL  360
AVNFPLVLHH MPDEGVTVEN HRDRLLRLVK HLSPNVVTLV EQEANTNTAP FLPRFVETMN  420
HYLAVFESID VKLARNHKER INVEQHCLAR EVVNLIACEG VEREERHEPL GKWRSRFHMA  480
GFKPYPLSSY VNATIKGLLE SYSEKYTLEE SDGALYLGWK NQPLITSCAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-601655318375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.7055s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0125610.0AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence.
GenBankAC0792790.0AC079279.4 Arabidopsis thaliana chromosome 1 BAC F17J6 genomic sequence, complete sequence.
GenBankAY0349290.0AY034929.1 Arabidopsis thaliana putative scarecrow protein (At1g50600) mRNA, partial cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303962.10.0scarecrow-like protein 5
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLR0IEZ40.0R0IEZ4_9BRAS; Uncharacterized protein
STRINGCagra.7055s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]