PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.7149s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 114aa    MW: 12591.5 Da    PI: 7.5018
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.7149s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA28.32.5e-0995114120
                 GATA   1 CsnCgttkTplWRrgpdgnk 20 
                          C++C tt+TplWR+gp g+k
  Cagra.7149s0001.1.p  95 CASCDTTSTPLWRNGPKGPK 114
                          ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011410.25189114IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-589113No hitNo description
Gene3DG3DSA:3.30.50.105.0E-793112IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.2E-695114IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MMGYQTNPNF SMFFSSENDD QNQYNYDHYN DLSSSTSVDC TLSLGTPSTR LDDHRRFSNA  60
GSNNISGDFY FHGGNAKTTS YKKGGGGDHS LPRRCASCDT TSTPLWRNGP KGPK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.7149s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064391e-114AC006439.4 Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete sequence.
GenBankCP0026851e-114CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296733.27e-78GATA transcription factor 20
SwissprotQ9ZPX01e-66GAT20_ARATH; GATA transcription factor 20
TrEMBLR0G2T83e-76R0G2T8_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.7149s0001.1.p2e-79(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.14e-69GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]