PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.7286s0012.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 432aa    MW: 48550 Da    PI: 4.864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.7286s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10220262754
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            Er RR ++N+++e L+ l+P++      K + a+iL+  ++YI++L
  Cagra.7286s0012.1.p 220 TTERERRCHLNERYEALKLLIPNP-----SKGDRASILQDGIDYINEL 262
                          67*********************9.....79**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.05E-11211267No hitNo description
SuperFamilySSF474597.85E-14212281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11212271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.138213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-9219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-8220262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MYEESSCFDP IPTVEAIMDN DGGFCAAETT FPVSHQFQPP LGSTTNSFND DLKLPTMEEF  60
SVFPSVISLP NSETQNQSNN NNHLINQMIQ ESNWGVSADN SGFFMNTCDP NTTSTPIPDL  120
LSLLHLPRSS FSLPSSNLSD IMAGSCFTYD PLFHLNLPPQ PPLIPANDYS GFLLGIDNNG  180
TSQRDDSNVG NEINIDSGII EFSKEIRRKG RGKRKNRPFT TERERRCHLN ERYEALKLLI  240
PNPSKGDRAS ILQDGIDYIN ELRRRVSELK YLVERKRCGG RQQNNEVDNN NNNNNLDGHI  300
NEDDVDDDEN MNKKPESDVT DQCSSNNSLR CSWLQRKSKA SEVDVRIVDD EVTIKVVQKK  360
KINCLLLVSK VLDHLQLDLH HVAGGQIGEH YSFLFNTKIY EGSTIYASAI ANRVIEVVDK  420
HYMASLPINN Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.7286s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5198090.0AJ519809.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor.
GenBankAK1184410.0AK118441.1 Arabidopsis thaliana At2g31210 mRNA for putative bHLH transcription factor (bHLH091), complete cds, clone: RAFL19-68-P06.
GenBankBT0096750.0BT009675.1 Arabidopsis thaliana At2g31210 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294262.20.0transcription factor bHLH91
SwissprotQ8GX460.0BH091_ARATH; Transcription factor bHLH91
TrEMBLR0HPE80.0R0HPE8_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.7286s0012.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]