PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.7309s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 166aa    MW: 18166 Da    PI: 9.1556
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.7309s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00163557123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C k Fs+   L  H  +H
  Cagra.7309s0001.1.p 35 YRCKTCLKEFSSFQALGGHRASH 57
                         9***********99999998887 PP
2zf-C2H213.10.0002983105123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+Cg  F+    L  H+r+H
  Cagra.7309s0001.1.p  83 HPCPICGVDFPMGQALGGHMRRH 105
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-733105No hitNo description
PfamPF139121.4E-113458IPR007087Zinc finger, C2H2
PROSITE profilePS501579.1823557IPR007087Zinc finger, C2H2
SMARTSM003550.563557IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
PfamPF139121.7E-1083106IPR007087Zinc finger, C2H2
SMARTSM003550.2283105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.63783110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MVARSEIVED TVVECLMLLP RVGEYGGGGG EKRVYRCKTC LKEFSSFQAL GGHRASHKRL  60
TNSDDSSLLE SLSSHKKTKV TSHPCPICGV DFPMGQALGG HMRRHRNEKT SVKTLVTRSF  120
LPEATTTVTT LKKCSSGKRV ACLDLDLDSM EGLVNWKLEL NLRIG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.7309s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291954.11e-95zinc finger protein ZAT8
SwissprotQ9LX859e-85ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLR0FQL63e-94R0FQL6_9BRAS; Uncharacterized protein
STRINGCagra.7309s0001.1.p1e-118(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.19e-74C2H2 family protein