PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.7309s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 166aa    MW: 17854.3 Da    PI: 10.3262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.7309s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000862143123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+k Fs+   L  H  +H
  Cagra.7309s0002.1.p 21 FRCKTCKKEFSSFQALGGHRASH 43
                         89**********99999998887 PP
2zf-C2H215.35.7e-0578100123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+Cg  F+    L  H+r+H
  Cagra.7309s0002.1.p  78 HVCPICGLNFPMGQALGGHMRKH 100
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-81943No hitNo description
PfamPF139122.1E-112044IPR007087Zinc finger, C2H2
SMARTSM003550.192143IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3282143IPR007087Zinc finger, C2H2
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-873100No hitNo description
SMARTSM003550.1478100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.74178105IPR007087Zinc finger, C2H2
PfamPF139123.4E-1078101IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MLLTRVGGDD GVGGGGEKRV FRCKTCKKEF SSFQALGGHR ASHNKLANNG DYTTSSLTRS  60
PKKKTPSKTT TTTTTTIHVC PICGLNFPMG QALGGHMRKH RNEKEKASSN ELVTRSFLPE  120
NATFTTMTTL KKSSSGKRVA CLDLHDLAAV ETGVNTDLEL GRSMY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.7309s0002.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292540.11e-116zinc finger protein ZAT8
SwissprotQ9LX859e-59ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLR0HNF71e-115R0HNF7_9BRAS; Uncharacterized protein
STRINGCagra.7309s0002.1.p1e-118(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46070.12e-57C2H2 family protein