PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.7393s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 303aa    MW: 33720.8 Da    PI: 7.5929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.7393s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27e-09161208455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++ Lq
  Cagra.7393s0006.1.p 161 SHSLAERVRREKISERMRILQKLVPGC----DKVTGKALMLDEIINYVQTLQ 208
                          8*************************9....555****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.13E-16155222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.16E-10155212No hitNo description
Gene3DG3DSA:4.10.280.106.8E-16157218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.32157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-6161208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-9163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MATFSYFQNY PHSLLDPILF PTPNSSIGLT GFIDQNVLHS LPDVSKIEVT SANPFLDEYN  60
VDKTESYGFK KQANTNKTTT TGSSSCDQLS QGPATTAING KNRRRKIRNV SSSKEGVEGR  120
KTKKPRINDS PTNVKEKKGS KEEPQKDYIH VRARRGQATD SHSLAERVRR EKISERMRIL  180
QKLVPGCDKV TGKALMLDEI INYVQTLQNQ VEFLSMKLAS TSPVVYDFGS DLDGLILRSE  240
MGSPEVVTSY TNTMPTTTPI FPSLLDNSIV HTHAQLQEEG GEERDEFVDR SGFNDNSFCS  300
FP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.7393s0006.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280862.10.0transcription factor bHLH137
SwissprotQ93W881e-163BH137_ARATH; Transcription factor bHLH137
TrEMBLR0GN380.0R0GN38_9BRAS; Uncharacterized protein
STRINGCagra.7393s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-145bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]