PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.7809s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 244aa    MW: 27540.1 Da    PI: 9.934
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.7809s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.2e-152974147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg WT+  d++l+++v+ +G ++W++I ++m+  Rt+k+c+ rw++ 
  Cagra.7809s0001.1.p 29 RGHWTQSQDLKLIELVEAYGLDNWDLIGEKMQ-ARTGKSCRFRWLNQ 74
                         899*****************************.***********996 PP
2Myb_DNA-binding51.22.8e-1683126348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          ++T eE+++ v a++ +G++ W++Ia+++  gRt+ ++k++w+ ++
  Cagra.7809s0001.1.p  83 PFTVEEEKIMVSAHNFYGNK-WSKIAKHLK-GRTDIDVKNHWNVHM 126
                          89******************.********9.************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-122877IPR001005SANT/Myb domain
PROSITE profilePS5129412.2922975IPR017930Myb domain
PfamPF002491.2E-142974IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-2729122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-213082IPR009057Homeodomain-like
CDDcd001673.15E-123273No hitNo description
PROSITE profilePS5129423.99176130IPR017930Myb domain
SMARTSM007171.1E-1380128IPR001005SANT/Myb domain
PfamPF002492.9E-1382125IPR001005SANT/Myb domain
CDDcd001674.96E-1183126No hitNo description
Gene3DG3DSA:1.10.10.608.5E-2183129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
PVNGVGANNA LPLRETQQEE RKSPYLGGRG HWTQSQDLKL IELVEAYGLD NWDLIGEKMQ  60
ARTGKSCRFR WLNQLDPTIN KAPFTVEEEK IMVSAHNFYG NKWSKIAKHL KGRTDIDVKN  120
HWNVHMNRTA WRSQTKTKKR CFTAALNPYG YHVPGNPSYE GIGIKKNCSR NMRNEETTNL  180
YADPRMPVQL SGHHHHFPIF PASDSLALST QLSISQPSSS PEAADVKIRK TPKFIDFLGV  240
GDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29291287106B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107112KHLKGR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning (PubMed:19542355, PubMed:21533201). Functions in both lateral organ separation and axillary meristem formation, in part through genetic interaction with the NAC domain genes CUC2 and CUC3 and the homeobox gene STM (PubMed:19542355). May be recruited by a variety of developmental programs for the development of floral organs and the initiation of ovule outgrowth (PubMed:21533201). {ECO:0000269|PubMed:19542355, ECO:0000269|PubMed:21533201}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.7809s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284977.20.0transcription factor MYB117
SwissprotQ9LQX51e-37MY117_ARATH; Transcription factor MYB117
TrEMBLR0GYZ61e-117R0GYZ6_9BRAS; Uncharacterized protein
STRINGCagra.7809s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17330310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39700.15e-50myb domain protein 89
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Colling J, et al.
    Hypersensitivity of Arabidopsis TAXIMIN1 overexpression lines to light stress is correlated with decreased sinapoyl malate abundance and countered by the antibiotic cefotaxime.
    Plant Signal Behav, 2016. 11(4): p. e1143998
    [PMID:26967827]