PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.7888s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 203aa    MW: 23136 Da    PI: 8.6217
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.7888s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.4e-092874346
                         SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46
                          WT eE +++ +a + l  +    +W +Ia+ ++ g+t  +++ r+  
  Cagra.7888s0001.1.p 28 TWTVEENKRFEKALAFLDDKdnpeSWFKIAALIP-GKTVADVIQRYKE 74
                         5*****************99**************.**********975 PP
2Myb_DNA-binding48.22.4e-15139183347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+ +++ + k++G+g+W+ Ia+ + ++Rt+ q+ s+ qky
  Cagra.7888s0001.1.p 139 PWTEDEHRRFLMGLKKYGKGDWRNIAKNFVTTRTPTQVASHAQKY 183
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.5692478IPR017884SANT domain
SMARTSM007171.7E-62578IPR001005SANT/Myb domain
CDDcd001671.72E-72875No hitNo description
SuperFamilySSF466894.24E-92883IPR009057Homeodomain-like
PfamPF002492.1E-72874IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-13131186IPR009057Homeodomain-like
PROSITE profilePS5129421.468132188IPR017930Myb domain
SuperFamilySSF466891.79E-17134187IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-19135187IPR006447Myb domain, plants
SMARTSM007171.1E-12136186IPR001005SANT/Myb domain
CDDcd001675.48E-11139184No hitNo description
PfamPF002495.2E-13139183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSSSSTMNRG GIDMFSPANT SWIFQEATWT VEENKRFEKA LAFLDDKDNP ESWFKIAALI  60
PGKTVADVIQ RYKELEDDVS DIEAGLIPIP GYRGDASSGA NCDYFFGLEN SGYGYDYAVG  120
GKRSFRPPLP EKERKKGVPW TEDEHRRFLM GLKKYGKGDW RNIAKNFVTT RTPTQVASHA  180
QKYFLRQLTD CKDKRRSSIH DIT
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.7888s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195304e-66AY519530.1 Arabidopsis thaliana MYB transcription factor (At5g01200) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288482.11e-139transcription factor DIVARICATA
SwissprotQ8S9H74e-71DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLR0H8W81e-137R0H8W8_9BRAS; Uncharacterized protein
STRINGCagra.7888s0001.1.p1e-151(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148841619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.11e-127MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]