PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.8123s0001.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 258aa MW: 28126.4 Da PI: 8.2252

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.8123s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.6e-09	181	222	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR++i +++ L+el+P+ +K++ +++LekA+ Y+k Lq Cagra.8123s0001.1.p 181 VKNRREKISERLKVLQELVPNG-----TKVDLVTMLEKAIGYVKFLQ 222 59****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.8E-11	171	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.5	172	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-12	175	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-8	178	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-6	181	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.51E-11	182	226	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MSLINDHDNE PLYISKLKSS EDLSSPEVCG LNGGASASSS SISHQQHQGF FFDHHQSFVL 60 PANSDSAFSV LDRNMSYSYT GWSEQIDSIS PRVIIKSSDC FATMSSFELT SNPASKPATN 120 HSDGDWLYSD STIVKTGSIL ESLSPKPAGN KRPSTGENTQ GSKKAKTKTT NSPKDPQSQA 180 VKNRREKISE RLKVLQELVP NGTKVDLVTM LEKAIGYVKF LQLQVKFWPI QGRKAPGISQ 240 VKEAIDAILS QQDTNSN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.8123s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488615	2e-49	AF488615.1 Arabidopsis thaliana clone bHLH083 putative bHLH transcription factor mRNA, partial sequence.
GenBank	AY128310	2e-49	AY128310.1 Arabidopsis thaliana unknown protein (At1g66470) mRNA, complete cds.
GenBank	BT006320	2e-49	BT006320.1 Arabidopsis thaliana At1g66470 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023635590.1	1e-153	LOW QUALITY PROTEIN: putative transcription factor bHLH086
Swissprot	Q9FJ00	1e-107	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	R0F3A1	1e-137	R0F3A1_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.8123s0001.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4260	28	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	2e-99	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	Cagra.8123s0001.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]