PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.8287s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 282aa    MW: 31283.4 Da    PI: 8.419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.8287s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015217238323
                          ETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                          Cp C+  Fs+  +L+ H  + H
  Cagra.8287s0005.1.p 217 CPQCNAKFSSVTTLVEHVEKtH 238
                          *****************99888 PP
2zf-C2H2201.9e-06253275223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +Cp+C++ F+++ +L++Hi + H
  Cagra.8287s0005.1.p 253 VCPKCSRGFRDPVDLVNHIERdH 275
                          7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183105.49E-12457No hitNo description
PROSITE profilePS510397.821056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.1E-101152IPR000058Zinc finger, AN1-type
SMARTSM001548.1E-71352IPR000058Zinc finger, AN1-type
PfamPF014282.9E-131349IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.105.0E-1091142IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.96E-893141No hitNo description
PROSITE profilePS510398.18498147IPR000058Zinc finger, AN1-type
SMARTSM001540.0089101142IPR000058Zinc finger, AN1-type
PfamPF014284.1E-8101140IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.349215243IPR007087Zinc finger, C2H2
SMARTSM003550.033215238IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217238IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-4219238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.829252280IPR007087Zinc finger, C2H2
SMARTSM003557.9252275IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280254275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDVCKQ IDFLPFTCDR CLQVFCLDHR SYMKHSCPKG DREDVTVVIC  60
PLCAKGVRLN PNEDPNITWE KHVNTDCDPS NYEKATKKKK CPVPRCKEQL TFSNTIKCRD  120
CNIDHCLKHR FGPDHTCPGP RKLPFMGFLS SGSSSSSRKE AKTARHNKAS ASTSSSSSSR  180
WSNLLSSAEA GISRLGNDIS QKLQFSSSSN DGIIEICPQC NAKFSSVTTL VEHVEKTHER  240
NKIQSHGKVT IDVCPKCSRG FRDPVDLVNH IERDHRGTSN A*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.8287s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0652720.0AY065272.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
GenBankAY0966200.0AY096620.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293510.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-178SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLR0HR080.0R0HR08_9BRAS; Uncharacterized protein
STRINGCagra.8287s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-173C2H2 family protein