PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.9063s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 203aa    MW: 22851.5 Da    PI: 6.9324
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.9063s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.43.9e-30157258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
                         dDgy+WrKYGqK++k+s++prsYY+Ct + C++kk+vers ++p++ +itYeg H h
  Cagra.9063s0001.1.p  1 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPICNAKKQVERSIDEPNTYIITYEGFHFH 57
                         7******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007749.3E-34159IPR003657WRKY domain
SuperFamilySSF1182906.93E-25158IPR003657WRKY domain
PROSITE profilePS5081126.659157IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-27157IPR003657WRKY domain
PfamPF031066.6E-25157IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
DDGYKWRKYG QKSIKNSPNP RSYYKCTNPI CNAKKQVERS IDEPNTYIIT YEGFHFHYNY  60
PFVLPDTTHW PNKKAKILKH DDPINKTSQT QEETKQAHLT EPANQNHPAH KAEENTLVNE  120
LFFPVDHCRG QQGLLEDVVA PAMKTTLARD SFLASSWSSL SSSCTSSSCS SSPPLSPSSL  180
CWSPNVDITF SDEILELLGR IS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-201571874Probable WRKY transcription factor 4
2lex_A2e-201571874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.9063s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280856.21e-146probable WRKY transcription factor 49
SwissprotQ9FHR75e-81WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLR0GAW71e-144R0GAW7_9BRAS; Uncharacterized protein
STRINGCagra.9063s0001.1.p1e-150(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.14e-82WRKY DNA-binding protein 49