PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.9104s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 404aa    MW: 45709.7 Da    PI: 5.2701
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.9104s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-172269148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+ Ed ll+ +v ++G g+W+++ ++ g+ R++k+c++rw ++l
  Cagra.9104s0001.1.p 22 KGPWTQAEDNLLIAYVDKHGDGNWNAVQKHSGLSRCGKSCRLRWVNHL 69
                         79*******************************************996 PP
2Myb_DNA-binding46.96.3e-1575118146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T+ E+++ ++++++lG++ W++ a +++ gRt++++k++w++
  Cagra.9104s0001.1.p  75 KGAFTEKEEQRVIELHALLGNK-WARMAGELP-GRTDNEIKNFWNT 118
                          799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3711769IPR017930Myb domain
SMARTSM007173.3E-152171IPR001005SANT/Myb domain
SuperFamilySSF466891.35E-2821116IPR009057Homeodomain-like
PfamPF002492.6E-162269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-242376IPR009057Homeodomain-like
CDDcd001672.89E-122469No hitNo description
PROSITE profilePS5129424.96770124IPR017930Myb domain
SMARTSM007174.7E-1474122IPR001005SANT/Myb domain
PfamPF002499.3E-1475118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2477123IPR009057Homeodomain-like
CDDcd001675.63E-1077120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MGKVRNDSGS DEDNATEKAF TKGPWTQAED NLLIAYVDKH GDGNWNAVQK HSGLSRCGKS  60
CRLRWVNHLR PDLKKGAFTE KEEQRVIELH ALLGNKWARM AGELPGRTDN EIKNFWNTRL  120
KRQQRLGLPV YPDEVREQAM NAATQSGFNS DHNSLDGHHS QDSMESDCVE IPQLDFQHLP  180
LNQTSYYHSM LRVVPSSGVF VTQQRPCFFQ PSNMYNLVAS SSPPPYMSTG KRYREPETDD  240
GYAMIEQSTQ LWNYPFVDNI SEQFLDSNDV TYSSPPEPLG PEAKKLELPS FQYYDSHEDH  300
GVVQQQSNSM GEHELLDNNN TLVQSSLTDH TPSSSLYDGL LESVVYGSER KKQVTETELE  360
STLLLQSSLL GHEPKSKLFF SYLTPTSLFV YSVHVCLTNL FTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30201235107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00279DAPTransfer from AT2G26960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.9104s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640225.10.0transcription factor MYB104
TrEMBLR0HUP80.0R0HUP8_9BRAS; Uncharacterized protein
STRINGCagra.9104s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.11e-179myb domain protein 81