PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.9217s0019.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 373aa    MW: 40740.1 Da    PI: 7.6032
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.9217s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044159181123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+++F++   L  H  +H
  Cagra.9217s0019.1.p 159 YQCKTCDRTFPSFQALGGHRASH 181
                          9***********99999998887 PP
2zf-C2H213.10.00029237259123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  F++   L  H+r+H
  Cagra.9217s0019.1.p 237 HECGICGAEFTSGQALGGHMRRH 259
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.26E-9158181No hitNo description
PfamPF139122.2E-12158183IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471159186IPR007087Zinc finger, C2H2
SMARTSM003550.028159181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
SuperFamilySSF576675.26E-9232259No hitNo description
Gene3DG3DSA:3.30.160.607.6E-4235261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-11236261IPR007087Zinc finger, C2H2
SMARTSM003550.047237259IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93237261IPR007087Zinc finger, C2H2
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEAFQEATKE QSLILKGKRT KRQRPQSPIP FSMISPPIVS SPARDMDGEF TDLDSKDNAI  60
GGNDEVNHKK DGLITSSSSS ASWSSHNDTT LKAAEDEEDQ DIANCLILLA QGHFLPHSNQ  120
HLTNNNNNNS NTAAYRFTSR RFLETSSSNG GGKAGYYVYQ CKTCDRTFPS FQALGGHRAS  180
HKKPKATSFY SNLDIKKNVY ANDAASLVTT TTVYNNNKNN NNRSLVVYGK ASNNKVHECG  240
ICGAEFTSGQ ALGGHMRRHR GAVVVAATVA PTVTVATAAA NTELSLSSMS FDQISDGQDN  300
LVMPERKKAR KTVVSLDLDL NLPAPEDENR VNNGYSFASK QNQEQEEQQM KQREEPKSLV  360
LSAPPTLVDC HY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.9217s0019.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0038850.0BT003885.1 Arabidopsis thaliana clone RAFL15-10-C05 (R20610) putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankBT0050310.0BT005031.1 Arabidopsis thaliana clone U20610 putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289848.10.0zinc finger protein ZAT5
TrEMBLR0FL910.0R0FL91_9BRAS; Uncharacterized protein
STRINGCagra.9217s0019.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-171C2H2 family protein