PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.9757s0009.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 218aa    MW: 24820 Da    PI: 7.5651
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.9757s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1331.3e-10124168549
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                          ++ +r+++NRe+A+rsR RK+  ie+L++++  L  eN++L ++l
  Cagra.9757s0009.1.p 124 RKRKRMESNRESAKRSRMRKQRHIENLKDEANRLGLENRELGNRL 168
                          67899*********************************9997655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.2E-13120184IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.1E-10121168No hitNo description
PROSITE profilePS5021710.162122168IPR004827Basic-leucine zipper domain
PfamPF001701.3E-8124168IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-9124171No hitNo description
CDDcd147027.98E-16125172No hitNo description
PROSITE patternPS000360127142IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MLSTVPAFSF TEPGLVNQLS DFQTGFTPWE FDCSALFFST IHHEPAVPSP CSGESETGSV  60
KIDTGFDESC IGSIRTSSGS DNFHAVPSPQ SDELDSKNMK TRINATDHNR AELNRPVLQV  120
TDERKRKRME SNRESAKRSR MRKQRHIENL KDEANRLGLE NRELGNRLRI VLYNLGLIST  180
DNDRLMSEQE ILTRRFLEMR QILILRQLQQ NPSLIIK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141KRSRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.9757s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0047861e-165AC004786.3 Arabidopsis thaliana chromosome 2 clone T20K9 map CIC06C07, complete sequence.
GenBankBT0109291e-165BT010929.1 Arabidopsis thaliana At2g22850 gene, complete cds.
GenBankBT0116491e-165BT011649.1 Arabidopsis thaliana At2g22850 mRNA, complete cds.
GenBankCP0026851e-165CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295633.11e-150transcriptional activator TAF-1
TrEMBLR0G0A21e-148R0G0A2_9BRAS; Uncharacterized protein
STRINGCagra.9757s0009.1.p1e-159(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22850.21e-121basic leucine-zipper 6