PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.9781s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 261aa    MW: 28766.8 Da    PI: 4.852
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.9781s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.3e-13194239655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Cagra.9781s0002.1.p 194 SIAERVRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKTLQ 239
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.678188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-16191255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.14E-12192243No hitNo description
Gene3DG3DSA:4.10.280.105.8E-16193254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10194239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MQSTNVGDGS GNCGGGGGEM SRSGLSRIRS APATWIETLL EEEEDEEGLK PNLCLTELLT  60
GNNNNSSVGI TSRDSFEFPS SAEQGLYSNS HQGGGFHRQN SSPADFLSGS GPGTDGFFSN  120
FGIPANYDYM SPNVDISPTK RSRDMETQFS SQMKEEQMSG GISGMMDMNM DKLLEDSVPC  180
RVRAKRGCAT HPRSIAERVR RTRISDRIRR LQELVPNMDK QTNTADMLEE AVEYVKTLQS  240
QIQELTEQQK RCRCKPKEEQ *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.9781s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4117910.0AF411791.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
GenBankAY0937940.0AY093794.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303282.11e-169transcription factor bHLH80 isoform X1
SwissprotQ9C8P81e-150BH080_ARATH; Transcription factor bHLH80
TrEMBLR0IDA11e-168R0IDA1_9BRAS; Uncharacterized protein
STRINGCagra.9781s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-136bHLH family protein