PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10000120m
Common NameCARUB_v10000120mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CAMTA
Protein Properties Length: 1029aa    MW: 116114 Da    PI: 6.1248
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10000120mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1186.23.3e-58211382118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      l+e ++rwl++ ei++iL+n++k+++++e++trp sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+++vl+cyYah+e n++f
  Carubv10000120m  21 LSEaQHRWLRPAEICEILQNHHKFHIASESPTRPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSIDVLHCYYAHGEGNENF 114
                      45559***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                      qrrcyw+Le++l +iv+vhylevk
  Carubv10000120m 115 QRRCYWMLEQDLMHIVFVHYLEVK 138
                      *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143785.15417143IPR005559CG-1 DNA-binding domain
SMARTSM010763.4E-8520138IPR005559CG-1 DNA-binding domain
PfamPF038597.7E-5123137IPR005559CG-1 DNA-binding domain
SuperFamilySSF812965.29E-14434520IPR014756Immunoglobulin E-set
PfamPF127961.4E-7616694IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.5E-18617729IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.837617728IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.64E-19618728IPR020683Ankyrin repeat-containing domain
CDDcd002042.96E-14623726No hitNo description
SMARTSM002483500634663IPR002110Ankyrin repeat
PROSITE profilePS500888.656634666IPR002110Ankyrin repeat
SMARTSM002480.0029667696IPR002110Ankyrin repeat
PROSITE profilePS5008811.22667699IPR002110Ankyrin repeat
SMARTSM000150.51842864IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525406.37E-8842892IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.73843872IPR000048IQ motif, EF-hand binding site
PfamPF006120.0025845863IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092865887IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.395866890IPR000048IQ motif, EF-hand binding site
PfamPF006124.5E-4868887IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1029 aa     Download sequence    Send to blast
MVDRKSFVFT SPPRLDMEQL LSEAQHRWLR PAEICEILQN HHKFHIASES PTRPASGSLF  60
LFDRKVLRYF RKDGHNWRKK KDGKTIKEAH EKLKVGSIDV LHCYYAHGEG NENFQRRCYW  120
MLEQDLMHIV FVHYLEVKGN RTSIGMKENN SNSVNGTSSV NIDSTASPTS TLSSLCEDAD  180
SGDSHQASSV LRASLEPQTG NRYGWTPASG MRNISHIQRN IVRESDSQRL VDVRPWDAVG  240
NSVTRYHDQP YCNNLLTQIQ PSVTDSMLVE ENIDKGGQLK AEHFRNPLQT QSNWQIPIQD  300
DLPLPKGHVD LFSHSGMTDD TDLALFEHRA QDNFETFSSL LGSENQEPFG NSYQVPPSNM  360
ESEYIPVMKS LLRSEDSLKK VDSFSRWASK ELGEMEDLQM QSSLGDIAWT TVECETATAG  420
ITLSPSLSED QHFTIVDFWP KFAETDAEVE VMVIGTFLLS PQEVIKYNWS CMFGEVEVPA  480
EILVDGVLCC HAPPHTAGHV PFYVTCSNRF ACSELREFDF LAGSTQKIDA ADVYGPYTTA  540
SSLHLRFEKL LTHRALVHEH HIFEDVGEKR RKISKIMLLK EEKEYLLPGT YQRYSAKQEP  600
KGQLFREQFE EELYIWLIHK VTEEGKGPNM LDENGQGILH FVAALGYDWA IKPILAAGVN  660
INFRDANGWS ALHWAAFSGR EETVAVLVSL GADAGALTDP SPELPLGKTA ADLAYANGHR  720
GISGFLAESS LTSYLEKLTV DSKENSSANS SGAKAVQTVS ERTAAPMSYG DIPEKLSLKD  780
SLTAVRNATQ AADRLRQVFR MQSFQRKQLS EFGDDDKIDI SEELAVSFAA CKSKNPGHSD  840
VSLSSAATHI QKKYRGWKKR KEFLLIRQRI VKIQAHVRGH QVRKQYRTVI WSVGLLEKII  900
LRWRRKGKGL RGFKGNAIPK TVEPEQPESA ICPTKPQEDE YDFLKEGRKQ TEERLQKALT  960
RVKSMVQYPE ARDQYRRLLT VVEGFRENEA SSSASVNNEE EPVNCDEDDL IDIDSLLNDD  1020
TLMMSFSP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10000120m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287400.0AK228740.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 1, complete cds, clone: RAFL16-07-H14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286969.10.0calmodulin-binding transcription activator 1 isoform X1
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLR0FCP00.0R0FCP0_9BRAS; Uncharacterized protein
STRINGXP_006286969.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein