PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10000129m
Common NameCARUB_v10000120mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CAMTA
Protein Properties Length: 1013aa    MW: 114236 Da    PI: 6.0711
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10000129mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1186.33.3e-5851222118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      l+e ++rwl++ ei++iL+n++k+++++e++trp sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+++vl+cyYah+e n++f
  Carubv10000129m   5 LSEaQHRWLRPAEICEILQNHHKFHIASESPTRPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSIDVLHCYYAHGEGNENF 98 
                      45559***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                      qrrcyw+Le++l +iv+vhylevk
  Carubv10000129m  99 QRRCYWMLEQDLMHIVFVHYLEVK 122
                      *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143785.1541127IPR005559CG-1 DNA-binding domain
SMARTSM010763.4E-854122IPR005559CG-1 DNA-binding domain
PfamPF038597.6E-517121IPR005559CG-1 DNA-binding domain
SuperFamilySSF812965.13E-14418504IPR014756Immunoglobulin E-set
PfamPF127961.4E-7600678IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.4E-18601713IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.837601712IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.49E-19602712IPR020683Ankyrin repeat-containing domain
CDDcd002042.90E-14607710No hitNo description
PROSITE profilePS500888.656618650IPR002110Ankyrin repeat
SMARTSM002483500618647IPR002110Ankyrin repeat
PROSITE profilePS5008811.22651683IPR002110Ankyrin repeat
SMARTSM002480.0029651680IPR002110Ankyrin repeat
SMARTSM000150.51826848IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525406.37E-8826876IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.73827856IPR000048IQ motif, EF-hand binding site
PfamPF006120.0024829847IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092849871IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.395850874IPR000048IQ motif, EF-hand binding site
PfamPF006124.4E-4852871IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1013 aa     Download sequence    Send to blast
MEQLLSEAQH RWLRPAEICE ILQNHHKFHI ASESPTRPAS GSLFLFDRKV LRYFRKDGHN  60
WRKKKDGKTI KEAHEKLKVG SIDVLHCYYA HGEGNENFQR RCYWMLEQDL MHIVFVHYLE  120
VKGNRTSIGM KENNSNSVNG TSSVNIDSTA SPTSTLSSLC EDADSGDSHQ ASSVLRASLE  180
PQTGNRYGWT PASGMRNISH IQRNIVRESD SQRLVDVRPW DAVGNSVTRY HDQPYCNNLL  240
TQIQPSVTDS MLVEENIDKG GQLKAEHFRN PLQTQSNWQI PIQDDLPLPK GHVDLFSHSG  300
MTDDTDLALF EHRAQDNFET FSSLLGSENQ EPFGNSYQVP PSNMESEYIP VMKSLLRSED  360
SLKKVDSFSR WASKELGEME DLQMQSSLGD IAWTTVECET ATAGITLSPS LSEDQHFTIV  420
DFWPKFAETD AEVEVMVIGT FLLSPQEVIK YNWSCMFGEV EVPAEILVDG VLCCHAPPHT  480
AGHVPFYVTC SNRFACSELR EFDFLAGSTQ KIDAADVYGP YTTASSLHLR FEKLLTHRAL  540
VHEHHIFEDV GEKRRKISKI MLLKEEKEYL LPGTYQRYSA KQEPKGQLFR EQFEEELYIW  600
LIHKVTEEGK GPNMLDENGQ GILHFVAALG YDWAIKPILA AGVNINFRDA NGWSALHWAA  660
FSGREETVAV LVSLGADAGA LTDPSPELPL GKTAADLAYA NGHRGISGFL AESSLTSYLE  720
KLTVDSKENS SANSSGAKAV QTVSERTAAP MSYGDIPEKL SLKDSLTAVR NATQAADRLR  780
QVFRMQSFQR KQLSEFGDDD KIDISEELAV SFAACKSKNP GHSDVSLSSA ATHIQKKYRG  840
WKKRKEFLLI RQRIVKIQAH VRGHQVRKQY RTVIWSVGLL EKIILRWRRK GKGLRGFKGN  900
AIPKTVEPEQ PESAICPTKP QEDEYDFLKE GRKQTEERLQ KALTRVKSMV QYPEARDQYR  960
RLLTVVEGFR ENEASSSASV NNEEEPVNCD EDDLIDIDSL LNDDTLMMSF SP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10000129m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287400.0AK228740.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 1, complete cds, clone: RAFL16-07-H14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286969.10.0calmodulin-binding transcription activator 1 isoform X1
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLR0FCP00.0R0FCP0_9BRAS; Uncharacterized protein
STRINGXP_006286969.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein