PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10000250m
Common NameCARUB_v10000250mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family FAR1
Protein Properties Length: 807aa    MW: 92299 Da    PI: 7.3436
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10000250mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.16.9e-24194285190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                      ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+ kl ++ke     ++w+v+++++ HnHel 
  Carubv10000250m 194 EYYSTFARKSGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDGKLYLTKEVvggVSHWYVSQFSNVHNHELL 285
                      69********************8888.********************************************988889**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.9E-22194285IPR004330FAR1 DNA binding domain
PfamPF105513.5E-22417510IPR018289MULE transposase domain
PROSITE profilePS509669.767676724IPR007527Zinc finger, SWIM-type
PfamPF044342.3E-8696723IPR007527Zinc finger, SWIM-type
SMARTSM005753.3E-7699726IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MVENDQAETP VGSGNFTSSH IHEQRRFDGD GEKRRRRERG NKRVKQWRSS NSTSKPQGKE  60
SIASPTTINL NPIPFLSFLF KILLPKLPNQ SSSRVSKLLS NSIQSSSKTI PIRSFHTLTM  120
AMKPLNNIWI RRQQCPCGDW KCYIRFEGDE SITKSELESS STTTTSNTVS SLYDNTVFMP  180
YVGQIFGTDD EAFEYYSTFA RKSGFSIRKA RSTESQNLGV YRRDFVCYRS GFNQPRKKAN  240
VEHPRERKSV RCGCDGKLYL TKEVVGGVSH WYVSQFSNVH NHELLEDDQV RLLPAYRKIK  300
QDDQDRILLL SKAGFPVNRI VKLLELEKGV QAGQLPFIEK DVRNFVRACK KSVQENDAFL  360
SEKRDSDTLE LLESCKVLAE RDMEFGYDCT SDENQKVENL AWAYGDCVRA YSLFGDVVVF  420
DTTYRSIPYG LLLGVFFGID NNGKAILLGC VLLQDESCHS FTWALQTFIR FMRGRHPQTI  480
LTDIDTGLKD AIAREMPNTN HVVFMWHIVS KLASWFSQTL GSHYDEFRAG FEMLCRVGNV  540
DEFEQQWNLL VTRFGLVPDR HAALLYSCRA SWSPCYIREH FVAQTMTPDF NLSIESFLKR  600
IVSGPTCMQL LLEEVSAAAC LAKQIPPRFT YSSLKTCMPM EDHAREILTP FAFSVLQNEM  660
VLSVQYAVSE MANGPYIVHH FKKMEGECCV IWNPENEEIQ CSCKEFEHSG ILCRHILRVL  720
TVKNCFHIPE QYFLLRWRQD SPHVAAENQN GQGIGDDCAQ TFHSLTETLL TESMISKDRL  780
DYANQELSLL IDRVRNVPPA NCLYQP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10000250m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankT26D30.0AF262043.1 Arabidopsis thaliana BAC T26D3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637270.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLR0FDR20.0R0FDR2_9BRAS; Uncharacterized protein
STRINGXP_006287088.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]