PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10000262m

Common Name

CARUB_v10000255mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

FAR1

Protein Properties

Length: 788aa MW: 90560.8 Da PI: 7.2411

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10000262m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.5	3e-20	57	131	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn+YA ++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC+a ++v+++++gkw+++++++eHnHel Carubv10000262m 57 EYYNAYAIRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 131 69************************************876..............589*************************98 PP
2	FAR1	67.6	3.1e-21	224	300	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ vGF+vr+ + +sk +g+it+r+fvCs+eg+++++ r+gC a +++k++++g w v++l+++HnH+l p Carubv10000262m 224 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEP 300 6*************************************9994..............799*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.9E-16	57	131	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.0E-16	224	300	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.0E-25	399	491	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.361	673	709	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-7	681	706	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.1E-8	684	711	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 788 aa Download sequence Send to blast
MDSADTELNS FNNMVAKAYP VRVLHHNNNG ISEDEEGGSG VEPYVGLEFD TAEEAREYYN 60 AYAIRTGFKV RTGQLYRSRT DGTVSSRRFV CSKEGFQLNS RTGCTAFIRV QRRDTGKWVL 120 DQIQKEHNHE LGGEGQVEET TPRPSRAPAP TKLGVTVNPH RPKMKVVDES ERGTRSCPGG 180 FKRFKGGGEG EVSDDHHQTQ QPKAVNGTEP YAGLEFGSAN EACQFYQAYA EVVGFRVRIG 240 QLFRSKVDGS ITSRRFVCSR EGFQHPSRMG CGAYMRIKRQ DSGGWIVDRL NKDHNHDLEP 300 GKKNDAGMKK ITDDGTGGLD SVDLIELNDF GNNHIKKTRE NRIGKEWYPL LLDYFQSRQT 360 EDMGFFYAVE LDVNNGSCMS IFWADSRARF ACSQFGDTVV FDTSYRKGNY AVPFATIIGF 420 NHHRQPVLLG CAMVADESKE AFLWLFQTWL RAMSGRRPRS IVADQDLPIQ QALVQVFPGA 480 HHRYSAWQIR EKEQENLRPF PSEFKYEYEK CIYQTQTTVE FDSVWNALIN KYGLRDDIWL 540 REIYEQRENW VPAYLRASFF AGIPINGTIE PFFGASLDAL TPLREFISRY EQALEQRREE 600 ERKEDFNSYN LQPFLQTKEP VEEQCRRLYT LTVFRIFQNE LVQSYNYLCL KTYEEGAISR 660 FLVRKCGNES EKHAVTFSAS NLNSSCSCQM FEHEGLLCRH ILKVFNLLDI RELPSRYILH 720 RWTKNAEFGF VRDMESGVSA QDLKALMVWS LREAASKYIE FGTSSLEKYK LAYEIMREGG 780 KKLCWQR*

Sequence ? help Back to Top

Protein Sequence Length: 788 aa Download sequence Send to blast

MDSADTELNS FNNMVAKAYP VRVLHHNNNG ISEDEEGGSG VEPYVGLEFD TAEEAREYYN  60
AYAIRTGFKV RTGQLYRSRT DGTVSSRRFV CSKEGFQLNS RTGCTAFIRV QRRDTGKWVL  120
DQIQKEHNHE LGGEGQVEET TPRPSRAPAP TKLGVTVNPH RPKMKVVDES ERGTRSCPGG  180
FKRFKGGGEG EVSDDHHQTQ QPKAVNGTEP YAGLEFGSAN EACQFYQAYA EVVGFRVRIG  240
QLFRSKVDGS ITSRRFVCSR EGFQHPSRMG CGAYMRIKRQ DSGGWIVDRL NKDHNHDLEP  300
GKKNDAGMKK ITDDGTGGLD SVDLIELNDF GNNHIKKTRE NRIGKEWYPL LLDYFQSRQT  360
EDMGFFYAVE LDVNNGSCMS IFWADSRARF ACSQFGDTVV FDTSYRKGNY AVPFATIIGF  420
NHHRQPVLLG CAMVADESKE AFLWLFQTWL RAMSGRRPRS IVADQDLPIQ QALVQVFPGA  480
HHRYSAWQIR EKEQENLRPF PSEFKYEYEK CIYQTQTTVE FDSVWNALIN KYGLRDDIWL  540
REIYEQRENW VPAYLRASFF AGIPINGTIE PFFGASLDAL TPLREFISRY EQALEQRREE  600
ERKEDFNSYN LQPFLQTKEP VEEQCRRLYT LTVFRIFQNE LVQSYNYLCL KTYEEGAISR  660
FLVRKCGNES EKHAVTFSAS NLNSSCSCQM FEHEGLLCRH ILKVFNLLDI RELPSRYILH  720
RWTKNAEFGF VRDMESGVSA QDLKALMVWS LREAASKYIE FGTSSLEKYK LAYEIMREGG  780
KKLCWQR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10000262m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC068655	0.0	AC068655.3 Genomic Sequence For Arabidopsis thaliana Clone F17K4 From Chromosome V, complete sequence.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006286363.1	0.0	protein FAR1-RELATED SEQUENCE 12 isoform X1
Swissprot	Q3E7I5	0.0	FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBL	R0FBV1	0.0	R0FBV1_9BRAS; Uncharacterized protein
STRING	XP_006286364.1	0.0	(Capsella rubella)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	0.0	FAR1-related sequence 12

Link Out ? help Back to Top
Phytozome	Carubv10000262m
Entrez Gene	17882367

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]