PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10000399m
Common NameCARUB_v10000399mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 668aa    MW: 76035.9 Da    PI: 8.8146
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10000399mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-07484524239
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39 
                      ++W++eE + l ++++++++g   +W+ I++++g+gR+  +
  Carubv10000399m 484 KSWSKEEIDMLRKGITKFPKGtsqRWEVISEYIGTGRSVDE 524
                      58**********************************99765 PP
2Myb_DNA-binding27.66.7e-09611654445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W++  +  l++a+k ++++   +W++Ia  ++ g+t +qck ++ 
  Carubv10000399m 611 WSAVQERALIQAFKTFPKEtnqRWERIATAVP-GKTMNQCKKKFA 654
                      ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.31E-1975178IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.1E-1996200IPR001623DnaJ domain
SMARTSM002712.5E-1499174IPR001623DnaJ domain
PfamPF002261.4E-16100179IPR001623DnaJ domain
PROSITE profilePS5007617.512100182IPR001623DnaJ domain
CDDcd062571.59E-12100171IPR001623DnaJ domain
PRINTSPR006252.5E-7105123IPR001623DnaJ domain
PRINTSPR006252.5E-7123138IPR001623DnaJ domain
PRINTSPR006252.5E-7154174IPR001623DnaJ domain
PROSITE patternPS006360159178IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.133478521IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-4479525IPR009057Homeodomain-like
SMARTSM007177.2E-4482534IPR001005SANT/Myb domain
SuperFamilySSF466896.65E-7484527IPR009057Homeodomain-like
PfamPF002491.5E-5484525IPR001005SANT/Myb domain
CDDcd001670.00311485525No hitNo description
SMARTSM007172.9E-9607659IPR001005SANT/Myb domain
SuperFamilySSF466892.44E-9608656IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-6611655IPR009057Homeodomain-like
CDDcd001672.00E-6611657No hitNo description
PROSITE profilePS500907.166611657IPR017877Myb-like domain
PfamPF002491.7E-7611655IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MQSWGINSAI KLLTYSNELS GGQALYASSN CHPVKALNRE PAGHAFHAAA LKLRGCAKEA  60
TGKNEDTDKK VPKEKDNEFI PSYDSHNNKG KKKSGKQQHD HYALLGLGNL RYLATEDQIR  120
KSYREAALKH HPDKLATLLL AEETEEAKQA KKDEIESHFK LIQEAYEILM DPLKRRIFDS  180
TDEFDDEVPT DCAPQDFFKV FGPAFKRNAR WSSASHVPDL GDENTPLKEV DRFYSYWYGF  240
KSWREFPEEE EHDIEQAESR EEKRWMEREN AKKSNKARKE EHARIRILVD NAHKKDIRIL  300
KRKEEEKAMK LQMKEAKVMA KKKLEEEAAA AIEEEKRRKE EEAKRAAEAA QLHKRAKEKN  360
KKLLQKERSR LRALSAPVLS QKLLGISVDH VEDLCMSLNT EQLRKLCDKM KNKEGLALAK  420
VLKNGNSIDD DETESKEEEV QVAVKQNGHI EAKVETNGHV EARVETNGHV EARVDTATHQ  480
KKEKSWSKEE IDMLRKGITK FPKGTSQRWE VISEYIGTGR SVDEILKATK TVLLHKPDSA  540
KAFDSFLEKR KPAASIASPL STREELGEPI IVTKPHAEDN STKTETTEKN GKGEENNSEQ  600
DAAAVSDPEG WSAVQERALI QAFKTFPKET NQRWERIATA VPGKTMNQCK KKFAELKDII  660
RTKKPTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A4e-1519629920123Zuotin
5dje_B4e-1519629920123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320338KKKLEEEAAAAIEEEKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10000399m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020300.0AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287223.10.0dnaJ homolog subfamily C member 2
TrEMBLR0FE250.0R0FE25_9BRAS; Uncharacterized protein
STRINGXP_006287223.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.20.0DnaJ domain ;Myb-like DNA-binding domain