PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10000500m
Common NameCARUB_v10000489mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 612aa    MW: 68020.6 Da    PI: 5.0329
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10000500mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.41.7e-37681953128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       G+rF+Pt eel+++yLk+k  gk+  ++e+i e++i+++ P+ Lp  + +++++ ewyfFs+   +++++k+ +r+t sgyWk+tgk++ + +
  Carubv10000500m  68 IGYRFSPTGEELINDYLKNKNLGKTWLVHEAIGEINILSYIPELLPdlAVIRSKDPEWYFFSPIVYTNSKKKEMKRITGSGYWKTTGKNRIIRD 161
                      69***********************999999**************96447788888************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k+g ++glkktL++y+g+ p+g+ t Wvmhey++
  Carubv10000500m 162 KSGVEIGLKKTLMYYEGKVPNGVWTPWVMHEYHI 195
                      ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-4162213IPR003441NAC domain
PROSITE profilePS5100540.89666213IPR003441NAC domain
PfamPF023653.5E-2169195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MLSSPATIIT SRKIFSKFCD EYYLPQTNKS YKYLSLRLCF SSPITSPSLY LKKKQSSRKT  60
KNMVKDLIGY RFSPTGEELI NDYLKNKNLG KTWLVHEAIG EINILSYIPE LLPDLAVIRS  120
KDPEWYFFSP IVYTNSKKKE MKRITGSGYW KTTGKNRIIR DKSGVEIGLK KTLMYYEGKV  180
PNGVWTPWVM HEYHITSLPH LQINYVICQV KYKGEAKDIS YGNNLTESSH SLDFDSNTAI  240
AMYTPEPADS YVICNVCGRG GKEVVNISNG DSSSEPSLPS LVSDSNTIRL TCIIPPVFQV  300
EQPGQGNLYE NDLMLPMNEQ MGGSDPNSIN NSPYVQLQAP FSLQENDELL SGLPQNLTHT  360
SYGNNMTEPS HSLVFDSNTA MASNRAPEPA IQVEQAGGNN FVGMSLDDLI DPNEDLSEWD  420
EYYDPDTFFS DDINNTNTSL QPQAPHLSPS DNEFIDGLMN VCQRQVKDLF TLSMTENRNN  480
HAATKPLSGT IPDYSSDSDS DAESISATSY PSTSSPVDSD GSSNRCLSSC SSTDSCKDPS  540
TGRETRAVLS KQEVKQGTPK AIDVPIMKTE KKGWFITEEA MERNHKMKII GFILLLALIG  600
MITSALLNVK A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-236919520142NO APICAL MERISTEM PROTEIN
1ut4_B1e-236919520142NO APICAL MERISTEM PROTEIN
1ut7_A1e-236919520142NO APICAL MERISTEM PROTEIN
1ut7_B1e-236919520142NO APICAL MERISTEM PROTEIN
4dul_A1e-236919520142NAC domain-containing protein 19
4dul_B1e-236919520142NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10000500m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637094.10.0NAC domain-containing protein 69 isoform X1
TrEMBLR0H9B70.0R0H9B7_9BRAS; Uncharacterized protein
STRINGXP_006287296.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01540.23e-86NAC with transmembrane motif1