PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10000776m
Common NameCARUB_v10000776mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 504aa    MW: 57075.7 Da    PI: 4.8833
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10000776mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.4e-07434489147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      r+ WT eE+e l+ +v+++  +      W++I ++      ++Rt+ ++k++w++ 
  Carubv10000776m 434 RLLWTFEEEEMLKVGVEKFAAEanknmPWRKILEMGEkvfhETRTPSDLKDKWRNM 489
                      677******************9**********99877*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-8429494IPR009057Homeodomain-like
PROSITE profilePS500907.886429490IPR017877Myb-like domain
SuperFamilySSF466892.61E-9432491IPR009057Homeodomain-like
SMARTSM007170.0017433492IPR001005SANT/Myb domain
CDDcd116603.22E-10437490No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
KKKRFVTFMC LFIHLPQYAS LLFITFPLLR LESANFKTET DEIEKMKMRA KAILVRSSPN  60
SLDPYPSLPS LPDDEANDLS TTQCDTDVDI VPDTFVERDV PPKKRHCLGT NENTNRGVSL  120
EPLLNLDACI VCEVADERVS RCCGIDCLLS FHGECLYADL GDNSEDLANP FCPYCWLKIL  180
TLKSKTLREK AVNAEKAVFM YLDKELKSRG EDRTLSGSEN GNREHSVDST DIVSNQELQG  240
EKDGCSSKEE QVQVEKDFDI SRGENISLIE ETDQPEENQG KVGTDKVIDE IGASEREERI  300
ASEKFQDAED ENNDETAKDQ TRVRTGAGKR GYVSTFLSMQ ESFSGKEQDQ HQQNDKQRRR  360
RGIELNTIDS ESDTSSKGSS NERNGEDVTE QVTLSAPVTS PSGKVYNQQA TTRFVAKSKT  420
VRDISFFNKD QRRRLLWTFE EEEMLKVGVE KFAAEANKNM PWRKILEMGE KVFHETRTPS  480
DLKDKWRNMV GARLGQKKDK TAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354360DKQRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10000776m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287565.20.0uncharacterized protein LOC17882878
TrEMBLR0HA350.0R0HA35_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006287565.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327