PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10000816m
Common NameCARUB_v10000816mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CPP
Protein Properties Length: 492aa    MW: 54926 Da    PI: 9.0441
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10000816mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.72.6e-14121159241
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      ++k+CnCk+skClk+YCeCfa+g++C+  C+C +C+N+ e
  Carubv10000816m 121 QQKHCNCKNSKCLKLYCECFASGSYCNG-CNCLNCHNNLE 159
                      79**************************.********976 PP
2TCR51.71.7e-16204243140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+Ckks ClkkYCeC++a++ Cse+C+C+dCkN e
  Carubv10000816m 204 KHSKGCHCKKSGCLKKYCECYQANVLCSENCRCQDCKNFE 243
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.2E-16120160IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.683121244IPR005172CRC domain
PfamPF036384.5E-11122157IPR005172CRC domain
SMARTSM011145.3E-19204245IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12207242IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
IPKRNKKKKK KRFQVSTLKH KKQTPLLLLF FAMEDSSSNQ NPCQSDISIS AKKTDSFQKS  60
LEPPPCSPVK SSQESATEVT PPQKLPLHRF NHNQVQKNQS GKYRVSKQSE FESVENTPNK  120
QQKHCNCKNS KCLKLYCECF ASGSYCNGCN CLNCHNNLEN ESSRQEAITA ILERNPDAFK  180
PKIAGSPLGT KDLQENVRQM LLGKHSKGCH CKKSGCLKKY CECYQANVLC SENCRCQDCK  240
NFEGSEERNA LVHGPQVSDS YIQQTTNAAV NRAIDMSGYL NPPDSRKRKN KDASHSLAVS  300
PVVRNQMANR VIRYGDTSLF SLPNTKAVSG STTCAYRSSL SNTIQPHHVR ELCSLLVSKS  360
VDVAKKLSGA KCETDKGRKY DKDPSVAPAQ RHANEINDSP DCVLDANRMN EKPLSPATRA  420
LMCDEEHEMV SEKDTLTRVK TSQEKEDTNT SSEIYLEQEK QILSSFRDYL IQLSNRGSLN  480
GKNIKANTNP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-331172536132Protein lin-54 homolog
5fd3_B2e-331172536132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210KRNKKKKKK
2511KKKKKKR
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10000816m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054051e-98AC005405.1 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence.
GenBankCP0026881e-98CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287605.20.0protein tesmin/TSO1-like CXC 7
SwissprotF4JY840.0TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLR0HA940.0R0HA94_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006287605.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.10.0Tesmin/TSO1-like CXC domain-containing protein