PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001065m
Common NameCARUB_v10001065mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 416aa    MW: 46650.3 Da    PI: 4.7599
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001065mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.32.4e-33571482102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k++++++d++l+ +isw   g sfvv+d+ efa+++Lp  Fkh+nf+SFvRQLn+YgF+k+++++         weF+++ F +gkk+ll+
  Carubv10001065m  57 FLSKTFDLVDDPSLDPVISWGLAGASFVVWDPLEFARTILPMNFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANEAFLRGKKHLLK 141
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r++s
  Carubv10001065m 142 NIHRRRS 148
                      ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.9E-3352146IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5553146IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-3553146IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.3E-2957146IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-175780IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-1795107IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434096120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-17108120IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MSPKKYDFPK PSPISVPGSL YSDCVDDTSD IMGFSGSTPP LPPTPLDLLQ ANQVPPFLSK  60
TFDLVDDPSL DPVISWGLAG ASFVVWDPLE FARTILPMNF KHNNFSSFVR QLNTYGFRKI  120
DTDKWEFANE AFLRGKKHLL KNIHRRRSPQ SNQTCTSSCN QSQGSPTEVG GEIEKLRKER  180
RALMEEMVEL QQQSKGTARH VDAVNQRLKA AEQRQKQLLS FLAKLFQNPA FLERLKNLKG  240
REKGALGLEK ARRKFIKHQQ PQDSPTGAEM VKYEADDWER LLMYDEETEK TPLSGQQGMT  300
SSVGGTDPKG KNLMNISEEE MTKPDYLMSF PSPEGLIKQE ETWSMGFDTT IPSFGNTDVW  360
GNTMDYSDVS EFGFVAETAS GGLPDVYWEQ FAAGITENGF NWPTGDDDNT PMDDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-245415117125Heat shock factor protein 1
5d5u_B7e-245214624129Heat shock factor protein 1
5d5v_B7e-245214624129Heat shock factor protein 1
5d5v_D7e-245214624129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress response. Activated by DREB2A under heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001065m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1173180.0AK117318.1 Arabidopsis thaliana At5g03720 mRNA for putative heat shock transcription factor, complete cds, clone: RAFL16-88-H09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287844.10.0heat stress transcription factor A-3
SwissprotQ8GYY10.0HSFA3_ARATH; Heat stress transcription factor A-3
TrEMBLR0FEU00.0R0FEU0_9BRAS; Uncharacterized protein
STRINGXP_006287844.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109502529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.10.0heat shock transcription factor A3
Publications ? help Back to Top
  1. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]
  4. Hu Z, et al.
    Histone acetyltransferase GCN5 is essential for heat stress-responsive gene activation and thermotolerance in Arabidopsis.
    Plant J., 2015. 84(6): p. 1178-91
    [PMID:26576681]
  5. Song C,Chung WS,Lim CO
    Overexpression of Heat Shock Factor Gene HsfA3 Increases Galactinol Levels and Oxidative Stress Tolerance in Arabidopsis.
    Mol. Cells, 2016. 39(6): p. 477-83
    [PMID:27109422]
  6. Kim GD,Cho YH,Lee BH,Yoo SD
    STABILIZED1 Modulates Pre-mRNA Splicing for Thermotolerance.
    Plant Physiol., 2017. 173(4): p. 2370-2382
    [PMID:28223317]
  7. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]