PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001144m
Common NameCARUB_v10001144mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TALE
Protein Properties Length: 392aa    MW: 43896.6 Da    PI: 6.3066
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001144mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.9e-083303632154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  Carubv10001144m 330 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 363
                      469*****************************87 PP
2ELK28.92.5e-10284305122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++++++++E++
  Carubv10001144m 284 ELKHELKQGYKEKIVDIREEIL 305
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.1E-19119163IPR005540KNOX1
PfamPF037901.2E-17122162IPR005540KNOX1
SMARTSM012564.3E-28175230IPR005541KNOX2
PfamPF037911.7E-20180229IPR005541KNOX2
PROSITE profilePS512139.969284304IPR005539ELK domain
SMARTSM011886.1E-4284305IPR005539ELK domain
PfamPF037898.9E-7284305IPR005539ELK domain
PROSITE profilePS5007111.726304367IPR001356Homeobox domain
SMARTSM003892.4E-11306371IPR001356Homeobox domain
SuperFamilySSF466895.13E-16306370IPR009057Homeodomain-like
CDDcd000862.50E-11307368No hitNo description
Gene3DG3DSA:1.10.10.602.3E-25311368IPR009057Homeodomain-like
PfamPF059201.1E-17324363IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MAFHNNHFNH FTDQQQQQPP PPPQQQQQHF HESAPPNWLL RSDNNFLNLQ TSASAAATSS  60
DSPSSAAANQ WLSRSSSFLQ RGGAASNNAT GSGDVVEDVT GGEESMIGEK KEAERWQNAK  120
HKAEILSHPL YEQLLSAHVA CLRIATPVDQ LPRIDAQLAQ SQNVVAKYST LDTAQGLLAG  180
DDKELDHFMT HYVLLLCSFK EQLQQHVRVH AMEAVMACWE IEQSLQSFTG VSPGEGTGAT  240
MSEDEDEQVE SDAHLFDGSL DGLGFGPLVP TESERSLMER VRQELKHELK QGYKEKIVDI  300
REEILRKRRA GKLPGDTTSV LKAWWQSHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ  360
RKRNWHSNPS SSTVSKNKRR SNAGENSGRE R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12307371872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001144m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX923930.0X92393.1 A.thaliana mRNA for KNAT4 homeobox protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287910.10.0homeobox protein knotted-1-like 4 isoform X1
SwissprotP480010.0KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLR0HAZ40.0R0HAZ4_9BRAS; Uncharacterized protein
STRINGXP_006287910.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.10.0KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]