PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001399m
Common NameCARUB_v10001399mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 333aa    MW: 36940 Da    PI: 9.8877
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001399mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.8e-1483127147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Carubv10001399m  83 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVVQIRSHAQKY 127
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-1777133IPR009057Homeodomain-like
PROSITE profilePS5129415.678132IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-780133IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-1881130IPR006447Myb domain, plants
SMARTSM007171.3E-1182130IPR001005SANT/Myb domain
PfamPF002492.3E-1283127IPR001005SANT/Myb domain
CDDcd001674.17E-985128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
KKAVPKFLSQ SESENAKRIA IFESSMVSVN PRPKGFPFVD PVDMSLPASS EGFGSAPVTG  60
RTVSFSEDPA TKIRKPYTIK KSRENWTEQE HDKFLEALHL FDRDWKKIEA FVGSKTVVQI  120
RSHAQKYFLK VQKSGANEHL PPPRPKRKAI HPYPQKAPKN VAFTSHVIGS LPSSSTTPLL  180
EPGYLYSSDP QSLLGNQAVC ASSSSSWNHE STNLTKPVIE VEEPGVSATA LPKNICSKED  240
TTGRVRVLTN PSKEESYEKP HLVMPNFAEV YSFIGSVFDP NTSGHLQRLK QMDPINMETV  300
LLLMRNLSVN LTSPEFAEQR RLISSYSAKA LK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001399m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195131e-158AY519513.1 Arabidopsis thaliana MYB transcription factor (At4g01280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288162.20.0protein REVEILLE 5 isoform X1
SwissprotC0SVG50.0RVE5_ARATH; Protein REVEILLE 5
TrEMBLR0H8560.0R0H856_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006288162.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.20.0MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]