PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001450m
Common NameCARUB_v10001450mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 325aa    MW: 35093.1 Da    PI: 8.4862
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001450mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.4e-11165212454
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                      +kr +r+ +NRe+ArrsR+RK+a + eLe+   +L  eN++L k l   ++
  Carubv10001450m 165 VKRVKRMLSNRESARRSRRRKQAHLSELET---QLRVENSKLMKGLTDVTQ 212
                      79***************************8...678899888877766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.4E-12162223IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.623164196IPR004827Basic-leucine zipper domain
PfamPF001702.6E-9165208IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-8166207No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-7166238No hitNo description
PROSITE patternPS000360169184IPR004827Basic-leucine zipper domain
PfamPF124987.3E-12230279IPR020983Basic leucine-zipper, C-terminal
PfamPF124981.7E-5285319IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEKVFSGEDI SGNINWSAVD GTTTTAMNRS ASEWAFHRFI QETSAAAADD DANAGDSTTT  60
TVCGVSVSSP PNVPVDSEEY RAFLKSKLNL ACAAVAMKRG SFIKPQDTSG RSDNGGVYTT  120
NTSEQGSLAS SKASPMMSSA ITSGSELSGD EEEADGETNM NPTNVKRVKR MLSNRESARR  180
SRRRKQAHLS ELETQLRVEN SKLMKGLTDV TQTFNDAAVE NRVLKANIET LRAKVKMAEE  240
TVKRLTGFNP MFHTIPQIGT TVSLPTETSN SLDTTSSHVT TPEPVSSGNK SKGLIGCKMN  300
RTASMRRVES LEHLQKRIRS VGDQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178185RRSRRRKQ
2180185SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269|PubMed:26263501, ECO:0000269|PubMed:29348240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001450m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0108580.0AJ010858.1 Arabidopsis thaliana mRNA for bZIP protein BZ3.
GenBankAK3171690.0AK317169.1 Arabidopsis thaliana AT5G28770 mRNA, complete cds, clone: RAFL21-54-H13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023636533.10.0basic leucine zipper 63 isoform X1
SwissprotB9DGI80.0BZP63_ARATH; Basic leucine zipper 63
TrEMBLR0FFU10.0R0FFU1_9BRAS; Uncharacterized protein
STRINGXP_006288214.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68462743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-156bZIP family protein
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Mair A, et al.
    SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants.
    Elife, 2016.
    [PMID:26263501]
  5. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]