PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001454m
Common NameCARUB_v10001454mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 325aa    MW: 35813.1 Da    PI: 10.3178
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001454mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87e-31257314359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++++++++tYegeHnh+
  Carubv10001454m 257 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDETSMLIVTYEGEHNHS 314
                      9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.8E-15216253IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.7E-33243315IPR003657WRKY domain
PROSITE profilePS5081129.471250316IPR003657WRKY domain
SuperFamilySSF1182901.22E-26253314IPR003657WRKY domain
SMARTSM007745.5E-37255315IPR003657WRKY domain
PfamPF031061.8E-26257313IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEEVEAANKA AVESCHGVLN LLSQQTNVSL MVETREAVSK FKRVSSLLSI GLGQRKIKKL  60
NNNNKFSSSL LPQHMFLESP ISGCVPILAP KPLQVVPASH PSLMLFNQRM CVDKSFLELK  120
PPSLRVIDPK PYQFIHSQQR GVYSRSKSGL NLKFDGSSGG GVGSCYSPSI SNGSRSFVSS  180
LSMDHSVTDY DRSSFHLIGL PLGSDHMSQH SRRTSCSGSL KCGSRSKCHC SKKRKLRVKR  240
SIKVPAISNK IADIPPDEYS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERCVDET  300
SMLIVTYEGE HNHSRIPSSQ SAHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-21248317775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001454m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288217.10.0probable WRKY transcription factor 74
SwissprotQ93WU60.0WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLR0H8890.0R0H889_9BRAS; Uncharacterized protein
STRINGXP_006288217.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-167WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]