PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001474m
Common NameCARUB_v10001450mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 321aa    MW: 34649.5 Da    PI: 8.0886
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001474mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.12.6e-15158209455
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                      +kr +r+ +NRe+ArrsR+RK+a + eLe+ v +L  eN++L k l   +++
  Carubv10001474m 158 VKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSKLMKGLTDVTQT 209
                      79****************************************9988776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.2E-18155219IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-11157209No hitNo description
PROSITE profilePS5021710.909157208IPR004827Basic-leucine zipper domain
PfamPF001701.7E-13158205IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.71E-12158209No hitNo description
PROSITE patternPS000360162177IPR004827Basic-leucine zipper domain
PfamPF124987.2E-12226275IPR020983Basic leucine-zipper, C-terminal
PfamPF124981.6E-5281315IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEKVFSGEDI SGNINWSAVD GTTTTAMNRS ASEWAFHRFI QETSAAAADD DANAGDSTTT  60
TVCGVSVSSP PNVPVDSEEY RAFLKSKLNL ACAAVAMKRD TSGRSDNGGV YTTNTSEQGS  120
LASSKASPMM SSAITSGSEL SGDEEEADGE TNMNPTNVKR VKRMLSNRES ARRSRRRKQA  180
HLSELETQVS QLRVENSKLM KGLTDVTQTF NDAAVENRVL KANIETLRAK VKMAEETVKR  240
LTGFNPMFHT IPQIGTTVSL PTETSNSLDT TSSHVTTPEP VSSGNKSKGL IGCKMNRTAS  300
MRRVESLEHL QKRIRSVGDQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171178RRSRRRKQ
2173178SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269|PubMed:26263501, ECO:0000269|PubMed:29348240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001474m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4468760.0AF446876.1 Arabidopsis thaliana AT5g28770/T32B20_60 mRNA, complete cds.
GenBankAY0526880.0AY052688.1 Arabidopsis thaliana AT5g28770/T32B20_60 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288212.10.0basic leucine zipper 63 isoform X2
SwissprotB9DGI80.0BZP63_ARATH; Basic leucine zipper 63
TrEMBLR0H8850.0R0H885_9BRAS; Uncharacterized protein
STRINGXP_006288214.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.11e-155bZIP family protein
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Mair A, et al.
    SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants.
    Elife, 2016.
    [PMID:26263501]
  5. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]