PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001688m
Common NameCARUB_v10001688mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 275aa    MW: 31725.6 Da    PI: 10.5017
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001688mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.67.6e-34822071128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lp G+rFhPt++el+ +yL +k+ +++l+  ++i+ +d++ ++P ++p   +++ek+ yfF+k+++ +++++r + +  +gyWk+ gk++++++
  Carubv10001688m  82 LPIGYRFHPTEQELILHYLLPKAFASPLPS-SIIPVFDLFFSHPLTFPG--DSKEKHRYFFCKKKEVSSNEQRIKTVSGDGYWKHIGKERPIIA 172
                      699*************************99.88***************4..4578999************************************ PP

              NAM  95 kkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                        g++vg+++tL+fy  ++++++ ++t+W m ey+l
  Carubv10001688m 173 -CGKAVGIRRTLAFYetNKSSSNCNRTRWSMTEYSL 207
                      .999***********4434667778*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-4075226IPR003441NAC domain
PROSITE profilePS5100537.56582227IPR003441NAC domain
PfamPF023654.9E-2083207IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
CKTHITKGYT SLPSLSLSFF LSVLPLFRWN DGAVLIKTIF EILIHFRRPN FKKKEKKRRR  60
RRRRREDMEM EKRIVVNGGM RLPIGYRFHP TEQELILHYL LPKAFASPLP SSIIPVFDLF  120
FSHPLTFPGD SKEKHRYFFC KKKEVSSNEQ RIKTVSGDGY WKHIGKERPI IACGKAVGIR  180
RTLAFYETNK SSSNCNRTRW SMTEYSLAGF ASAKVFGEWA VYNVYERKGS KARKQRKSRD  240
MDDEDLSCSI HFIVGSSDHE TGPPPPSPPT SADE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-21632074140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15164KKKEKKRRRRRRRR
25661KRRRRR
35664KRRRRRRRR
45764RRRRRRRR
55864RRRRRRR
65865RRRRRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001688m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0842160.0AY084216.1 Arabidopsis thaliana clone 100085 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288429.21e-154NAC domain-containing protein 41
TrEMBLR0FGA40.0R0FGA4_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006288429.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-123NAC domain containing protein 84