PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001714m
Common NameCARUB_v10001714mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 270aa    MW: 31192.4 Da    PI: 4.9067
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001714mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.85e-121058350
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyeys 50
                     ie++  r+v f  R+  i+KK +ELS+LC+++ + +i+s+ + +l  ++
  Carubv10001714m 10 IEDEAARKVLFYERKREIIKKLSELSTLCGVKTCGVIYSPYNpELEAWP 58
                     99********************************999998653777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.5E-9159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.222148IPR002100Transcription factor, MADS-box
CDDcd002662.29E-20384No hitNo description
SuperFamilySSF554551.7E-16393IPR002100Transcription factor, MADS-box
PfamPF003191.5E-121051IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MERRMKYSLI EDEAARKVLF YERKREIIKK LSELSTLCGV KTCGVIYSPY NPELEAWPSR  60
EGAEGVITEF MEVPVAKRTE RMVSQEAFLR ERIASVQLQL QKLRAENRDF QIQNIMFGCL  120
RGEIDMSNLG ELDNQDLTSF IDKCIDKLIC RAKHLRENGE SSSPLSLLPP SRPLVVPDLD  180
VVQVGDNDRE NEIQNHQNLI QRQYDFLIEY YGQIPQKIHK FNLNMNVNMD LNFNSNSNRR  240
MSLDLNLIPH AEEDEDVPSM EGSHPPTYN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001714m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637087.11e-161MADS-box transcription factor PHERES 2 isoform X1
TrEMBLR0FH890.0R0FH89_9BRAS; Uncharacterized protein
STRINGXP_006288453.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.15e-70AGAMOUS-like 38