PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10001730m

Common Name

CARUB_v10001730mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TCP

Protein Properties

Length: 267aa MW: 30212.5 Da PI: 6.9718

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10001730m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	90.7	3.1e-28	48	126	3	82
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssa 82 g+kdrhsk+ T +g+RdRR+Rls+ +a++++dLq++LG+ ++sk i+WLl++ak + l+ +++++ s+ + + s+ Carubv10001730m 48 GGKDRHSKVFTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWLLEAAKNDVELLPPLQFPPGSFHqvN---PNLSQ 126 78*************************************************************99999655222...22222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.365	49	107	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	7.7E-27	49	155	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MEMGLNSSIE DIRFKQEVAD DHNQPSSLSL LRQRWNNPRI VRVSKTFGGK DRHSKVFTVR 60 GLRDRRIRLS VMTAIQVYDL QERLGLSQPS KVIDWLLEAA KNDVELLPPL QFPPGSFHQV 120 NPNLSQMGES FPGVFDLGSC SNRDNMDLDQ RKWARFDHNT SLDHGFDIDH HHFSNSIQSN 180 KLYFPTSTTT SASSSYHYNI GHLQQSLLDQ SGNVTVAFST NSNLNPPLAE TMNSLFPRYP 240 SFLGGGHQLQ LFNENSNSSN QRDHVE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-17	54	108	1	55	Putative transcription factor PCF6
5zkt_B	2e-17	54	108	1	55	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00497	DAP	Transfer from AT5G08070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10001730m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006288467.1	0.0	transcription factor TCP17
Swissprot	Q9LEZ9	1e-122	TCP17_ARATH; Transcription factor TCP17
TrEMBL	R0H8V5	0.0	R0H8V5_9BRAS; Uncharacterized protein
STRING	XP_006288467.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08070.1	1e-119	TCP domain protein 17

Link Out ? help Back to Top
Phytozome	Carubv10001730m
Entrez Gene	17884334

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]