PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10001764m

Common Name

CARUB_v10001764mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NF-YC

Protein Properties

Length: 258aa MW: 28975.9 Da PI: 5.1198

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10001764m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	54.4	2.8e-17	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki+++de+v +i+ +P l+ska elf+ +l ++ + + +t+ ++++v + +ifdfl ++v + Carubv10001764m 6 QTRFPATRIKKIMQTDEEVGKIAMAVPLLVSKALELFLQDLCNHTYDITLSRGAKTVSSFHLKQCVHSFNIFDFLRETVNK 86 789*************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.3E-25	2	72	IPR009072	Histone-fold
Pfam	PF00808	3.2E-17	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	3.64E-18	18	88	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MKKKLQTRFP ATRIKKIMQT DEEVGKIAMA VPLLVSKALE LFLQDLCNHT YDITLSRGAK 60 TVSSFHLKQC VHSFNIFDFL RETVNKVPDL GGSDAEDQSA TKRRKLVEDS NCNDEDFKST 120 QMHEVKHSGS GRGRRGRGRG RGGGRTGNGL SLKFEEDLED GSPESSRSPS PENRSHEYTS 180 WKKVASHNNP SNVRNFDLNV DLDENGDTAT WLERRLEGSP DWPLLGMNDM KLDPDQQQQQ 240 ASASDEEDYD EESIDQD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	6e-24	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	141	RGRRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10001764m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006288499.1	0.0	dr1-associated corepressor
TrEMBL	R0FGG8	0.0	R0FGG8_9BRAS; Uncharacterized protein
STRING	XP_006288499.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13968	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	1e-108	NF-YC family protein

Link Out ? help Back to Top
Phytozome	Carubv10001764m
Entrez Gene	17882645