PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001830m
Common NameCARUB_v10001830mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 244aa    MW: 27699.3 Da    PI: 6.0761
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001830mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.38.3e-1323105286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm..rergfer..spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W+++ + +L+ea  ++  +l+ g+l++++W++v++ +  r++ + r  + +qCk++++ l+k+yk +k+  +       st+++fd+l+
  Carubv10001830m  23 WSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADTVnsRHGDYVRakTDVQCKNRIDTLKKKYKSEKAKLSP------STWRFFDRLD 105
                      *************************************97777786555999*****************99996......68*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-2321106No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
METTPQSKAS GSHRPPLGRE DWWSEEATAT LVEAWGNRYV KLNHGNLRQN DWKDVADTVN  60
SRHGDYVRAK TDVQCKNRID TLKKKYKSEK AKLSPSTWRF FDRLDFLIGP VVKKSAGGVI  120
KSVPIVNPNH LNPAGSGSSL EDDDDDDDDE TGDWGFVARE HSRVEEIDLS EGSTCRELAT  180
AILKFGEVYE KIEGKKQQMM IELEKQRMEV IKEVELQRMN MLMEMQLEIE KSKLRKRGLG  240
SGM*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001830m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288549.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG85e-30ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLR0FGL51e-180R0FGL5_9BRAS; Uncharacterized protein
STRINGXP_006288549.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-136sequence-specific DNA binding transcription factors