PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001843m
Common NameCARUB_v10001764mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YC
Protein Properties Length: 241aa    MW: 26906.3 Da    PI: 4.5552
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001843mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC33.21.1e-101693098
            NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                     +++de+v +i+  +P l+ska elf+ +l   ++  + +   +t+    ++++v + +ifdfl ++v +
  Carubv10001843m  1 MQTDEEVGKIAMAVPLLVSKALELFLQDLCNHTYDITLSRGAKTVSSFHLKQCVHSFNIFDFLRETVNK 69
                     889*************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.97E-18171IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.6E-16168IPR009072Histone-fold
PfamPF008089.3E-11154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MQTDEEVGKI AMAVPLLVSK ALELFLQDLC NHTYDITLSR GAKTVSSFHL KQCVHSFNIF  60
DFLRETVNKV PDLGGSDAED QSATKRRKLV EDSNCNDEDF KSTQMHEVKH SGSGRGRRGR  120
GRGRGGGRTG NGLSLKFEED LEDGSPESSR SPSPENRSHE YTSWKKVASH NNPSNVRNFD  180
LNVDLDENGD TATWLERRLE GSPDWPLLGM NDMKLDPDQQ QQQASASDEE DYDEESIDQD  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A3e-161542174Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114124RGRRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001843m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288499.11e-179dr1-associated corepressor
TrEMBLR0FGG81e-178R0FGG8_9BRAS; Uncharacterized protein
STRINGXP_006288499.11e-179(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.12e-94NF-YC family protein