PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10002022m

Common Name

CARUB_v10002022mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

G2-like

Protein Properties

Length: 195aa MW: 22274.3 Da PI: 9.9921

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10002022m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.6	2.2e-31	21	75	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+ +rWtpeLHe+Fveav+qLGGse++tPk++l+l++ +gLt++hvkSHLQkYR+ Carubv10002022m 21 KQCMRWTPELHEAFVEAVNQLGGSERTTPKAVLKLLNNHGLTIYHVKSHLQKYRT 75 5779**************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.208	18	78	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-28	19	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-16	19	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-21	21	75	IPR006447	Myb domain, plants
Pfam	PF00249	7.3E-11	24	74	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-16	110	145	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MVLSEEQLSG TNSSSSVATS KQCMRWTPEL HEAFVEAVNQ LGGSERTTPK AVLKLLNNHG 60 LTIYHVKSHL QKYRTARYKP ETSEVTGEPQ EKKMTSMEDI KSLDMKTSVE FTQALRLQME 120 VQKRLHEQLE IQRTLQLHIE KQGRYKRTRA LLQKNHQSNV TPHLQKSNMV SKHEQMTGLN 180 LLQHQGNGSE KIET*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-29	20	79	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-29	20	79	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-29	20	79	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-29	20	79	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-29	20	79	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-29	20	79	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-29	20	79	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-29	20	79	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269\|PubMed:20838596, ECO:0000269\|PubMed:23788639}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10002022m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY045943	1e-172	AY045943.1 Arabidopsis thaliana unknown protein (At5g29000) mRNA, partial cds.
GenBank	AY085154	1e-172	AY085154.1 Arabidopsis thaliana clone 13378 mRNA, complete sequence.
GenBank	BT002344	1e-172	BT002344.1 Arabidopsis thaliana clone C104936 unknown protein (At5g29000) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023637667.1	1e-141	protein PHR1-LIKE 1 isoform X1
Refseq	XP_023637668.1	1e-141	protein PHR1-LIKE 1 isoform X1
Swissprot	Q8GUN5	9e-91	PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBL	R0H9I0	1e-140	R0H9I0_9BRAS; Uncharacterized protein
STRING	XP_006288712.1	1e-140	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.3	1e-84	G2-like family protein

Link Out ? help Back to Top
Phytozome	Carubv10002022m
Entrez Gene	17882626

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bonnot C, et al. A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. New Phytol., 2016. 209(1): p. 161-76 [PMID:26243630] Aleksza D,Horváth GV,Sándor G,Szabados L Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation. Plant Physiol., 2017. 175(1): p. 555-567 [PMID:28765275]