PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002458m
Common NameCARUB_v10002458mg, CARUB_v10012735mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 123aa    MW: 14392.7 Da    PI: 9.9681
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002458mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.59.9e-1314103383
                      EE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      k+l+  d  k+grl lp++ ++            g+k  ++++l + d ++++s+ v+l+ r++s+ y+l++GWk++ k+ gLkegD + ++
  Carubv10002458m  14 KALSDTDFDKHGRLQLPNSQIQLVltkmkdetkkGLK--KGIKLEVLDiTKNNSYFVTLKSRNSSRDYYLETGWKNMRKSLGLKEGDNIKLY 103
                      788899999***********96669988877764444..77899999977889******99**************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-1210105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-1511105IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-1011116No hitNo description
SMARTSM010199.5E-1012117IPR003340B3 DNA binding domain
PfamPF023621.1E-914104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MEDFRINGDM IISKALSDTD FDKHGRLQLP NSQIQLVLTK MKDETKKGLK KGIKLEVLDI  60
TKNNSYFVTL KSRNSSRDYY LETGWKNMRK SLGLKEGDNI KLYWDYLNYK FIILNFQYSL  120
IP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002458m
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_179783.14e-49F-box associated ubiquitination effector family protein
RefseqXP_006296022.15e-51putative B3 domain-containing protein At2g21920
SwissprotQ9SJ074e-50Y2192_ARATH; Putative B3 domain-containing protein At2g21920
TrEMBLR0ETA42e-82R0ETA4_9BRAS; Uncharacterized protein
STRINGXP_006279083.13e-83(Capsella rubella)
STRINGXP_006289061.13e-83(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15428310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.14e-16B3 family protein