PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002601m
Common NameCARUB_v10002601mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 227aa    MW: 24691.6 Da    PI: 6.267
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002601mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-183383155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+++++g
  Carubv10002601m 33 PVYRGVRKRN-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDVAALSIKG 83
                     68*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-133383IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-313492IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-213492IPR016177DNA-binding domain
SMARTSM003803.6E-343497IPR001471AP2/ERF domain
PROSITE profilePS5103223.6573491IPR001471AP2/ERF domain
PRINTSPR003675.3E-103546IPR001471AP2/ERF domain
CDDcd000182.20E-323593No hitNo description
PRINTSPR003675.3E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MIASKTTTTT PKTCSPSQDQ EQTKPVRDSG KHPVYRGVRK RNWGKWVSEI REPRKKSRIW  60
LGTFPSPEMA ARAHDVAALS IKGASAILNF PDLAVSFPRP SSLSPRDIQA AALKAAHMEI  120
MTTTTTTTTS QSCSSSSSSC FTFSSSQSSS SLESLVSTGS DELGEIVVLP SLGSSYDGSS  180
QLGKEFIFSD TTELWVYPPQ WSEGDYEMIP SALLSQDWDL QGLYNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1931911172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00529DAPTransfer from AT5G25810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002601m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289163.11e-165ethylene-responsive transcription factor TINY
SwissprotQ391271e-106TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLR0FJ321e-164R0FJ32_9BRAS; Uncharacterized protein
STRINGXP_006289163.11e-165(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-102ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]