PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002654m
Common NameCARUB_v10002654mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 232aa    MW: 25491.3 Da    PI: 10.0803
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002654mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.58.7e-284107199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C ++  +     p++q++++ +++k++G++ +++l++a p++ r+++++sl+ eA+ r+ +P+yG+vg+++++++ql+q
  Carubv10002654m   4 SCNGCRVLRKGCSENCSIRSSLawiesPESQANATVFLAKFYGRTGLVNLINAGPDHLRPAIFRSLLREACGRVVNPIYGSVGLLWSGSWQLCQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallke 99 
                      ++++++l +e
  Carubv10002654m  98 AAVDAVLKGE 107
                      **99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.6523109IPR004883Lateral organ boundaries, LOB
PfamPF031959.2E-224102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRSSLAWIES PESQANATVF LAKFYGRTGL VNLINAGPDH  60
LRPAIFRSLL REACGRVVNP IYGSVGLLWS GSWQLCQAAV DAVLKGEAIT PIATDTAANG  120
QGPPIKVYDI RHISKKENAA ANGSSRHRKR YKTRRVKAKQ EEKANEASHD SSLSHQSEDE  180
TANFPIELEL KLGIEPVLSR VVVPVKKRRM GVFRTCHVKK YTCNEDVGLS K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002654m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289206.11e-172LOB domain-containing protein 41
SwissprotQ9M8861e-105LBD41_ARATH; LOB domain-containing protein 41
TrEMBLR0GYW31e-171R0GYW3_9BRAS; Uncharacterized protein
STRINGXP_006289206.11e-172(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-108LOB domain-containing protein 41