PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10002727m

Common Name

CARUB_v10002727mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

GeBP

Protein Properties

Length: 212aa MW: 24290 Da PI: 10.5886

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10002727m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	60.2	5.4e-19	51	133	5	89
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 + w +eDei lLqG+i++k+ gk+p+dd ++ y+f+k+ i k ++++v+K+r++K+K ++++ + k s sk+ q + Carubv10002727m 51 KEWDKEDEIRLLQGMIEYKKLLGKNPFDDFKKTYRFIKEYIIYKPDSQDFVDKMRNFKNKLMDQRRI--KAKVLSSSKAYKQTSS 133 56************************************************************99998..5555555555555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.4E-11	51	127	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MGKVNTNKSK KKEVCGGSTA AQLTLKKRKN EGTLLANRDV NAKKSKKVGK KEWDKEDEIR 60 LLQGMIEYKK LLGKNPFDDF KKTYRFIKEY IIYKPDSQDF VDKMRNFKNK LMDQRRIKAK 120 VLSSSKAYKQ TSSKLVTLLR GNDDVGPSTV EKQKRTVMSG EGEKWFEDAS LVREVGSRGV 180 DEDSLMSKRD AVLVEKKNQI DQKWTHPHRV G*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	28	KKKEVCGGSTAAQLTLKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10002727m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023636069.1	1e-101	probable transcription factor At4g00232
TrEMBL	R0GZ04	1e-151	R0GZ04_9BRAS; Uncharacterized protein
STRING	XP_006289261.1	1e-152	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16691	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41765.1	5e-21	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Carubv10002727m
Entrez Gene	17884424