PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002745m
Common NameCARUB_v10002745mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family AP2
Protein Properties Length: 573aa    MW: 62772.5 Da    PI: 6.5584
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002745mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-11208264155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++  g++ k  + g ++ +e+Aa+a++ a++k++g
  Carubv10002745m 208 SIYRGVTRHRWTGRYEAHLWDnSCKrEGQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 264
                      57*******************88885445536655.779999**************98 PP
2AP251.23.2e-16307358155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  Carubv10002745m 307 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 358
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.96E-18208274No hitNo description
SuperFamilySSF541716.41E-15208274IPR016177DNA-binding domain
PfamPF008479.5E-9208264IPR001471AP2/ERF domain
PROSITE profilePS5103217.319209272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-12209273IPR001471AP2/ERF domain
SMARTSM003806.2E-23209278IPR001471AP2/ERF domain
PRINTSPR003672.6E-6210221IPR001471AP2/ERF domain
CDDcd000185.46E-24307368No hitNo description
PfamPF008474.0E-11307358IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-17307368IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-17308367IPR001471AP2/ERF domain
SMARTSM003805.0E-33308372IPR001471AP2/ERF domain
PROSITE profilePS5103218.742308366IPR001471AP2/ERF domain
PRINTSPR003672.6E-6348368IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MNSMNNWLGF SLSPHDQNHH RSTDVDSSTT TTAVDVASEY CFDLAAASDV SSAVQTSFPS  60
PFGVVLEAFT RDNNSHSRDW DINSGACNTI HNNEQNGPKL ENFLGRTTTI YNTANESVGD  120
GSGGLGGGDG GSLGLSMIKS WLSNQPVANV NHQDNGNGAR GLSLSMNSST TCDSKNYNNN  180
DAVQEKTIVD VVEATPKKTI ESFGQRTSIY RGVTRHRWTG RYEAHLWDNS CKREGQTRKG  240
RQGGYDKEEK AARAYDLAAL KYWGTTTTTN FPMSSYEKEV EEMKHMTRQE YVASLRRKSS  300
GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFG TQEEAAEAYD IAAIKFRGLS  360
AVTNFDMSRY NVKAILESPS LPIGSSAKRL KEVNTVPSMV ISNNVSESAN NVSGWQNAAF  420
QHHQGMDLSL LQQQQERYVG YYNGGNLSSE STRVCFKQGE EQQRFLSNSM DHYSSTSDDS  480
VTVCGNAVGY GGYQGFAIPV GTSVNCDAYT AAEIAYNARS HYYYAQQQQQ QQQIQQSPEG  540
DFPVAITIGS NMYFHGEGGG EGASTFSVWN GT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002745m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5856840.0AY585684.1 Arabidopsis thaliana clone at5g17430 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023636878.10.0AP2-like ethylene-responsive transcription factor BBM
SwissprotQ6PQQ40.0BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLR0GZ170.0R0GZ17_9BRAS; Uncharacterized protein
STRINGXP_006289276.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]