PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002787m
Common NameCARUB_v10002787mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 125aa    MW: 13852.6 Da    PI: 4.3919
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002787mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.53e-071331749
                     HHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF 17 rngilKKAeELSvLCdaevaviifsstgklyey 49
                     +ngi  K  ELSvLCd++va + +   gk  ++
  Carubv10002787m  1 KNGIYTKLCELSVLCDVNVAFLEYTGPGKPSTF 33
                     79******************9988888877666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.28E-10149IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.087137IPR002100Transcription factor, MADS-box
PfamPF003191.7E-6133IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
KNGIYTKLCE LSVLCDVNVA FLEYTGPGKP STFGSPSFHA VIQELCKLYN NMMDGARAEE  60
AKATEAAASV GPLPEDAWWK VPLEEVKDQE EMKQLLERFE GLYEKLCYGL AARSERNDTA  120
ENDK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002787m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289244.11e-70agamous-like MADS-box protein AGL62
TrEMBLR0GZ485e-87R0GZ48_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006289306.18e-88(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.11e-33AGAMOUS-like 64