PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002791m
Common NameCARUB_v10002791mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 144aa    MW: 17376.1 Da    PI: 9.9182
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002791mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.41.7e-20351393111
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk 95 
                       GfrFhP+d+ l+ +yL++kv++ + + +e  +++diy  ePw+L       ++e+  F++++  ++t + + +  t +g Wk+ gk ++v+sk
  Carubv10002791m  35 IGFRFHPRDHVLIRYYLEPKVAKIPKKKFELEDKTDIYAKEPWQLT------HTETDLFVPNEWWETTHEPQVKgETCEGCWKTLGKLRDVVSK 122
                      6************************9998988999**********6......356667888888888776666669*****************9 PP

              NAM  96 .kgelvglkktLvfykg 111
                       ++e++g k++L fy +
  Carubv10002791m 123 dTREVIGKKRSLSFYVK 139
                      77788**********43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023652.9E-41635IPR003441NAC domain
PROSITE profilePS5100522.67533143IPR003441NAC domain
SuperFamilySSF1019411.29E-1835142IPR003441NAC domain
PfamPF023651.1E-1035139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MTMVAKYNEK KQHKVWFRFH PRDHELIHYY LRPKIGFRFH PRDHVLIRYY LEPKVAKIPK  60
KKFELEDKTD IYAKEPWQLT HTETDLFVPN EWWETTHEPQ VKGETCEGCW KTLGKLRDVV  120
SKDTREVIGK KRSLSFYVKG ESK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002791m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023635711.11e-81NAC domain-containing protein 78
TrEMBLR0H3P01e-101R0H3P0_9BRAS; Uncharacterized protein
STRINGXP_006286412.11e-102(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.15e-29NAC domain containing protein 88