PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002886m
Common NameCARUB_v10002886mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 102aa    MW: 11540.3 Da    PI: 10.1029
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002886mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3407.1e-13896289
                     EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3  2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                     +k+lt sdv++++rl lpkk +e++       ++++++++ + d ++  W v++    ++++y++++GW +  +a++L++gD++ ++ ++ ++
  Carubv10002886m  8 EKKLTDSDVSNKARLHLPKKKVENIirstgVPIPRNGIQVEILDNNNSYW-VNF--GVGGSGYFIGSGWVNLRDAKHLRTGDIIKLYWEN-TK 96
                     79********************998**99855567888999999666665.666..678889***********************99433.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-13295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-15396IPR015300DNA-binding pseudobarrel domain
CDDcd100174.96E-12699No hitNo description
SMARTSM010197.6E-77101IPR003340B3 DNA binding domain
PfamPF023623.8E-10897IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MDPNMMIEKK LTDSDVSNKA RLHLPKKKVE NIIRSTGVPI PRNGIQVEIL DNNNSYWVNF  60
GVGGSGYFIG SGWVNLRDAK HLRTGDIIKL YWENTKFIFS M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002886m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289390.12e-69B3 domain-containing protein At1g08985
SwissprotQ8GWU13e-47Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBLR0HES14e-68R0HES1_9BRAS; Uncharacterized protein
STRINGXP_006289390.17e-69(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.13e-43B3 family protein